Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1563 104 1e-17 >seq1563 Length=18910200 Score = 104 bits (114), Expect = 1e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||||| || | |||||| ||| |||||| || ||||| || || || Sbjct 5357142 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 5357201 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 5357202 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 5357261 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || |||||||| |||||| | ||| ||| | ||| || || | ||| || Sbjct 5357262 ATGCCTTCCTTGTCCTGGATCTTG-GCTTTCACGTTCTCAATGGTATCGCTGGGCTCAAC 5357320 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || | ||| || || || || || | ||||||||||| ||||||||||| Sbjct 5357321 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 5357371 Score = 102 bits (112), Expect = 5e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| || ||||||| || | |||||| ||| |||||| || ||||| || || || Sbjct 5356686 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 5356745 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || || | ||| ||||| || || Sbjct 5356746 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 5356805 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT---CTCC 34656 | || |||||||| |||||| | || || | | || || | |||| ||| Sbjct 5356806 ATGCCTTCCTTGTCCTGGATCTTG-GCCTTGACATTCTCAATG-GTAT-CGCTTGGCTCG 5356862 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| ||| || || || || || | ||||||||||| ||||||||| Sbjct 5356863 ACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCATG 5356913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314714993399264