Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1756 129 5e-25 >seq1756 Length=808860 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || || || || ||||| || ||||| |||||| |||||||||| |||||||| || Sbjct 97478 GACCTGCCCCTCATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTACGTGTGTGAT 97537 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| || ||||| || || || ||||| |||||||| | || ||||| ||| Sbjct 97538 GGTGAGCTGTCGTGTCAGCTGTACCAGCGGTCGGGCGACATGGGTCTGGGAGTGCCTTTC 97597 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || ||||| || || || ||||||||||| || Sbjct 97598 AATATCGCCAGCTACGCACTTCTTACCTACATGATCGCCCA 97638 Score = 129 bits (142), Expect = 5e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || || || ||||| || || || ||||| ||||| || | ||| Sbjct 97638 TGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGCACTCCCAGACCC 97579 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| ||||| || || || ||||| || |||||||| |||| |||||||| ||| Sbjct 97578 ATGTCGCCCGACCGCTGGTACAGCTGACACGACAGCTCACCATCACACACGTAGAACTGG 97519 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| ||||| || ||||| || || || || Sbjct 97518 CAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTC 97478 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 ||||||||||||| | ||||||||||| ||||| || ||||||| || || || | Sbjct 97015 CCAAGGAGCTCTCAGCGAAAGGGGTGAAGATTTGGGATGCCAACGGGTCCCGGGATTTCC 97074 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 ||||||| | |||||| | | |||||||||||| |||| || || ||||| |||| Sbjct 97075 TGGACAACCTTGGGTTCACGGACAGAGAGGAGGGCGACCTGGGACCTGTGTACGGTTTCC 97134 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| ||||| ||||| ||||| Sbjct 97135 AGTGGAGGCACTTCGGGGCAGAGTA 97159 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| ||||| ||||| ||||||||||| ||||| || || |||| |||||||||||| Sbjct 97159 TACTCTGCCCCGAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGGTCGCCCTCCTCT 97100 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | |||||| | |||||||| || || || ||||||| || ||||| |||||| Sbjct 97099 CTGTCCGTGAACCCAAGGTTGTCCAGGAAATCCCGGGACCCGTTGGCATCCCAAATCTTC 97040 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 ||||| | ||||||||||||| Sbjct 97039 ACCCCTTTCGCTGAGAGCTCCTTGG 97015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448241062709760