Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq1756 129 5e-25
>seq1756
Length=808860
Score = 129 bits (142), Expect = 5e-25
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
|| || || || ||||| || ||||| |||||| |||||||||| |||||||| ||
Sbjct 97478 GACCTGCCCCTCATGGCTCTGCCCCCCTGCCACGCCCTCTGCCAGTTCTACGTGTGTGAT 97537
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| |||||||| || ||||| || || || ||||| |||||||| | || ||||| |||
Sbjct 97538 GGTGAGCTGTCGTGTCAGCTGTACCAGCGGTCGGGCGACATGGGTCTGGGAGTGCCTTTC 97597
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
|| || || || ||||| || || || ||||||||||| ||
Sbjct 97598 AATATCGCCAGCTACGCACTTCTTACCTACATGATCGCCCA 97638
Score = 129 bits (142), Expect = 5e-25
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| ||||||||||| || || || ||||| || || || ||||| ||||| || | |||
Sbjct 97638 TGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGCACTCCCAGACCC 97579
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||| ||||| || || || ||||| || |||||||| |||| |||||||| |||
Sbjct 97578 ATGTCGCCCGACCGCTGGTACAGCTGACACGACAGCTCACCATCACACACGTAGAACTGG 97519
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| |||||| ||||| || ||||| || || || ||
Sbjct 97518 CAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTC 97478
Score = 118 bits (130), Expect = 1e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
||||||||||||| | ||||||||||| ||||| || ||||||| || || || |
Sbjct 97015 CCAAGGAGCTCTCAGCGAAAGGGGTGAAGATTTGGGATGCCAACGGGTCCCGGGATTTCC 97074
Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421
||||||| | |||||| | | |||||||||||| |||| || || ||||| ||||
Sbjct 97075 TGGACAACCTTGGGTTCACGGACAGAGAGGAGGGCGACCTGGGACCTGTGTACGGTTTCC 97134
Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446
||||||| ||||| ||||| |||||
Sbjct 97135 AGTGGAGGCACTTCGGGGCAGAGTA 97159
Score = 118 bits (130), Expect = 1e-21
Identities = 113/145 (78%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
||||| ||||| ||||| ||||||||||| ||||| || || |||| ||||||||||||
Sbjct 97159 TACTCTGCCCCGAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGGTCGCCCTCCTCT 97100
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | |||||| | |||||||| || || || ||||||| || ||||| ||||||
Sbjct 97099 CTGTCCGTGAACCCAAGGTTGTCCAGGAAATCCCGGGACCCGTTGGCATCCCAAATCTTC 97040
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043
||||| | |||||||||||||
Sbjct 97039 ACCCCTTTCGCTGAGAGCTCCTTGG 97015
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448241062709760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |