Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1563 100 2e-16
>seq1563
Length=18910200
Score = 100 bits (110), Expect = 2e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || || ||||||||||| || || || ||||| || || ||||| ||
Sbjct 5357371 AACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCC 5357312
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| || || |||| | | ||| || || ||||| ||||| | || |||||
Sbjct 5357311 AGCGATACCATTGAGAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGAC 5357252
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | | || ||||||||||| || |||||||| | ||||| | || |||
Sbjct 5357251 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAC 5357192
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || || ||||||||
Sbjct 5357191 AACATCCAGAAGGAGTCCAC 5357172
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || ||||| || || ||||| | |
Sbjct 5356000 ATGCAGATCTTTGTCAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCAAGC 5355941
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || || ||||| ||||| | || ||||| ||
Sbjct 5355940 GACACCATTGAGAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 5355882
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||| ||||| || |||||||| | ||||| | || |||||
Sbjct 5355881 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 5355822
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 5355821 CATCCAGAAGGAGTCCAC 5355804
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| || || || || ||||| || || ||||| |||
Sbjct 5356228 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 5356169
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | || | | ||||| ||||| | || ||||| ||
Sbjct 5356168 GACACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 5356110
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | | || ||||||||||| || |||||||| | ||||| | || |||||
Sbjct 5356109 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 5356050
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 5356049 CATCCAGAAGGAGTCCAC 5356032
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||||||||| || || || ||||| || || || || | |
Sbjct 5356912 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACCATCACCCTGGAGGTCGAGCCAAGC 5356853
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | || | | ||||| ||||| | || ||||| ||
Sbjct 5356852 GATACCATTGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 5356794
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || || ||||||||||| || |||||||| | ||||| | || |||||
Sbjct 5356793 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAA 5356734
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||||||
Sbjct 5356733 CATCCAGAAGGAGTCCAC 5356716
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337993912974464
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |