Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1756 138 9e-28 seq3402 95.1 1e-14 >seq1756 Length=808860 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| || || || | |||||||||||| || || ||| Sbjct 97650 AGGCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGC 97591 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || |||| |||||| ||||| ||||| ||||| || || | | Sbjct 97590 ACTCCCAGACCCATGTCGCCCGACCGCTGGTACAGCTGACACGACAGCTCACCATCACAC 97531 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| ||||| || | ||| ||||| || || || |||||||| Sbjct 97530 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAG 97487 Score = 132 bits (146), Expect = 4e-26 Identities = 123/155 (79%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 30015 CGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGA 30074 |||| |||||||||||||| |||||||| ||||||||||| ||||| || |||| | || Sbjct 97149 CGAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGGTCGCCCTCCTCTCTGTCCGTGA 97090 Query 30075 AGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 | || ||||||| || || | ||| |||||||| ||||| ||||| ||||| ||| Sbjct 97089 ACCCAAGGTTGTCCAGGAAATCCCGGGACCCGTTGGCATCCCAAATCTTCACCCCTTTCG 97030 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30168 | |||||||| |||| ||||| || |||| |||| Sbjct 97029 CTGAGAGCTCCTTGGCATTTGTTGATCCCTGTGAC 96995 >seq3402 Length=17327306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 || ||||||||||||||||| | ||| |||| | || ||||| ||| |||| ||| ||| Sbjct 1304102 ACCCTGGCAGTAGACGATATTTGTCTGGACTGATTTCAGGGAGGAAAGTGTCACACTCAA 1304161 Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCCC 114161 | ||| || | | ||||||||||| ||| | |||||||||||||||| | |||| Sbjct 1304162 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCCTGCTCCCCGGGCTCTCCATCAACTCCT 1304221 Query 114162 CGTAG 114166 |||| Sbjct 1304222 GGTAG 1304226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406144349965888