Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq1756 156 3e-33 seq2322 150 1e-31 >seq1756 Length=808860 Score = 156 bits (172), Expect = 3e-33 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | |||||||||||| || || || Sbjct 97650 AGGCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGC 97591 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||||| |||||| ||||||||||| ||||| ||||| | Sbjct 97590 ACTCCCAGACCCATGTCGCCCGACCGCTGGTACAGCTGACACGACAGCTCACCATCACAC 97531 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| ||||| || | ||||||||| || || |||||||||||| || |||| Sbjct 97530 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCT 97477 Score = 150 bits (166), Expect = 1e-31 Identities = 139/175 (79%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||| Sbjct 97169 CATGTTTGTGTACTCTGCCCCGAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGGTC 97110 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 ||||| || |||| | ||| || ||||||| || || | ||| |||||||| || Sbjct 97109 GCCCTCCTCTCTGTCCGTGAACCCAAGGTTGTCCAGGAAATCCCGGGACCCGTTGGCATC 97050 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 27662 ||| ||||| ||||| ||| | |||||||| |||| ||||| || |||| |||| Sbjct 97049 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCATTTGTTGATCCCTGTGAC 96995 >seq2322 Length=1353266 Score = 150 bits (166), Expect = 1e-31 Identities = 206/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 69030 ATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGA 69089 |||||| | | |||||||| || | |||||| | | ||||||||| |||||| Sbjct 798882 ATAGGAGACCTGGAGGACACCATTTACAGAGACAGAGGGGATGAGGTGAACGGGTGGGGA 798823 Query 69090 AAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCA 69149 || || || | || | || | ||||| || | ||| ||| |||||| || Sbjct 798822 AAATTCTACCTTCCAGAGACAGTAAACATGCAAGTTGTAGGTGTAGTGGAGGGAACGTCA 798763 Query 69150 TACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGAC 69209 | || |||||| ||||||| ||||||||||| |||||| ||| |||||| |||||| Sbjct 798762 TGCCCGTGTGACGAGCTTGTTCTGATGACCTGTGAGGACAGAAAGCTGTACGCCTATGAT 798703 Query 69210 GGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCC 69269 ||||| |||||||||||||||||| | ||||| ||| | || || | ||| | Sbjct 798702 GGAGAGGAGCTGCATGTGGTGGCTTCAAGCCTGGACCAGTTACATGATGAGGAAATTGAG 798643 Query 69270 TATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317 ||||| || | |||||||||| |||| |||||||||||| ||||| Sbjct 798642 TATCCCTCACCCAAGAGCTATTACAATGGAGAGGCCTTCAAAGATATG 798595 Score = 125 bits (138), Expect = 5e-24 Identities = 174/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 ||||||||| |||||||| || || | || | || | |||||||| | ||| Sbjct 789462 GGTGAACGGGTGGGGAAAATTCTACCTTCCAAAGATAGTAAACATGCAGGTTGTAGGTGT 789403 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 ||| || | |||| | ||| | || ||||| ||||||||||| |||||| | || Sbjct 789402 AGTGGATGGCATCCCATGTCCGTGTAAACAACTTGTTCTGATGACCTGTGAGGACAAAAA 789343 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253 | |||||| |||||| ||||| ||||||||||| || ||| | ||| | | | Sbjct 789342 GATGTACGCCTATGATGGAGAGGAGCTGCATGTAGTAGCTTCAAGCCTGAACTGCCTAGA 789283 Query 69254 GGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313 || ||||||||| ||||| ||| | |||||||||| |||| |||||||||||| | Sbjct 789282 TGACAAAGGAATAGAGTATCCCTCATCCAAGAGCTATTACAATGGAGAGGCCTTCAAAGA 789223 Query 69314 TATG 69317 |||| Sbjct 789222 TATG 789219 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376 ||||||||||||||||| || |||||| | |||||| ||||| |||||||| | || Sbjct 798481 GACCAAGGAGGACTGGGCCAAAGTGAGGAGGGGCCCTGTGGGAAGGAGGTTGGACCAAGA 798422 Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436 |||||| ||||||||| | ||| || | | |||| |||||||| | | | || Sbjct 798421 GCATCAAAAACTGGTGCAAGCAAGAAAGTCCAGATTCCTGAAGAATCTCAAAGTTACCAA 798362 Query 69437 ACAAA 69441 ||||| Sbjct 798361 ACAAA 798357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369490051170848