Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq1756 156 3e-33
seq2322 150 1e-31
>seq1756
Length=808860
Score = 156 bits (172), Expect = 3e-33
Identities = 139/174 (80%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
|| || |||| ||| || |||||||| || || || | |||||||||||| || || ||
Sbjct 97650 AGGCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGC 97591
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| ||||||| |||||| ||||||||||| ||||| ||||| |
Sbjct 97590 ACTCCCAGACCCATGTCGCCCGACCGCTGGTACAGCTGACACGACAGCTCACCATCACAC 97531
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381
||||| ||||| || | ||||||||| || || |||||||||||| || ||||
Sbjct 97530 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCT 97477
Score = 150 bits (166), Expect = 1e-31
Identities = 139/175 (79%), Gaps = 1/175 (1%)
Strand=Plus/Minus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||||| ||||||||||| ||||| |||||||| ||||| |||||||| |||||||||||
Sbjct 97169 CATGTTTGTGTACTCTGCCCCGAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGGTC 97110
Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608
||||| || |||| | ||| || ||||||| || || | ||| |||||||| ||
Sbjct 97109 GCCCTCCTCTCTGTCCGTGAACCCAAGGTTGTCCAGGAAATCCCGGGACCCGTTGGCATC 97050
Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 27662
||| ||||| ||||| ||| | |||||||| |||| ||||| || |||| ||||
Sbjct 97049 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCATTTGTTGATCCCTGTGAC 96995
>seq2322
Length=1353266
Score = 150 bits (166), Expect = 1e-31
Identities = 206/288 (72%), Gaps = 0/288 (0%)
Strand=Plus/Minus
Query 69030 ATAGGACCCGTTGAGGACACAGAGTATAAAGACAGGCCTGCAGTGGTGAACGGATGGGGA 69089
|||||| | | |||||||| || | |||||| | | ||||||||| ||||||
Sbjct 798882 ATAGGAGACCTGGAGGACACCATTTACAGAGACAGAGGGGATGAGGTGAACGGGTGGGGA 798823
Query 69090 AAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTATGTGACGGGAACTCCA 69149
|| || || | || | || | ||||| || | ||| ||| |||||| ||
Sbjct 798822 AAATTCTACCTTCCAGAGACAGTAAACATGCAAGTTGTAGGTGTAGTGGAGGGAACGTCA 798763
Query 69150 TACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGGTGTACGGCTATGAC 69209
| || |||||| ||||||| ||||||||||| |||||| ||| |||||| ||||||
Sbjct 798762 TGCCCGTGTGACGAGCTTGTTCTGATGACCTGTGAGGACAGAAAGCTGTACGCCTATGAT 798703
Query 69210 GGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGGGGAAGAAGGAATAGCC 69269
||||| |||||||||||||||||| | ||||| ||| | || || | ||| |
Sbjct 798702 GGAGAGGAGCTGCATGTGGTGGCTTCAAGCCTGGACCAGTTACATGATGAGGAAATTGAG 798643
Query 69270 TATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACATATG 69317
||||| || | |||||||||| |||| |||||||||||| |||||
Sbjct 798642 TATCCCTCACCCAAGAGCTATTACAATGGAGAGGCCTTCAAAGATATG 798595
Score = 125 bits (138), Expect = 5e-24
Identities = 174/244 (71%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133
||||||||| |||||||| || || | || | || | |||||||| | |||
Sbjct 789462 GGTGAACGGGTGGGGAAAATTCTACCTTCCAAAGATAGTAAACATGCAGGTTGTAGGTGT 789403
Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193
||| || | |||| | ||| | || ||||| ||||||||||| |||||| | ||
Sbjct 789402 AGTGGATGGCATCCCATGTCCGTGTAAACAACTTGTTCTGATGACCTGTGAGGACAAAAA 789343
Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253
| |||||| |||||| ||||| ||||||||||| || ||| | ||| | | |
Sbjct 789342 GATGTACGCCTATGATGGAGAGGAGCTGCATGTAGTAGCTTCAAGCCTGAACTGCCTAGA 789283
Query 69254 GGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313
|| ||||||||| ||||| ||| | |||||||||| |||| |||||||||||| |
Sbjct 789282 TGACAAAGGAATAGAGTATCCCTCATCCAAGAGCTATTACAATGGAGAGGCCTTCAAAGA 789223
Query 69314 TATG 69317
||||
Sbjct 789222 TATG 789219
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 69317 GACCAAGGAGGACTGGGAGAAGGTGAGGCAGAGCCCTGCGGGAAAAAGGTTGGATGAGGA 69376
||||||||||||||||| || |||||| | |||||| ||||| |||||||| | ||
Sbjct 798481 GACCAAGGAGGACTGGGCCAAAGTGAGGAGGGGCCCTGTGGGAAGGAGGTTGGACCAAGA 798422
Query 69377 GCATCATAAACTGGTGGTGTCTCAAAAATCTGCACTGCTGAGGAATCTCAGAATCAGCAG 69436
|||||| ||||||||| | ||| || | | |||| |||||||| | | | ||
Sbjct 798421 GCATCAAAAACTGGTGCAAGCAAGAAAGTCCAGATTCCTGAAGAATCTCAAAGTTACCAA 798362
Query 69437 ACAAA 69441
|||||
Sbjct 798361 ACAAA 798357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 369490051170848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |