Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 535 6e-147
seq1563 89.7 7e-13
>seq2387
Length=643009
Score = 535 bits (592), Expect = 6e-147
Identities = 1303/1963 (66%), Gaps = 27/1963 (1%)
Strand=Plus/Minus
Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120
||||| || || ||| |||||| | |||||||| || || | || |||||||||||
Sbjct 88097 TTCTTCATCTCCTCACTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTC 88038
Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180
|| || || || |||||||| | || || || ||||| || || ||||| || | ||
Sbjct 88037 ACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 87978
Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240
| || || ||||| |||| || || || || || || || ||||| || |||| ||
Sbjct 87977 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 87918
Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300
| || || |||| || ||| | ||| || || || || ||||| ||||| ||
Sbjct 87917 AGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAGGAGCTTCCAGTCCCACAGG 87858
Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360
|| | || ||||| | ||||| || || || || || || | || ||
Sbjct 87857 TCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACGGGGGAGCCT 87798
Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417
| ||||| || || || || || | |||| || || || ||||| |||| ||
Sbjct 87797 TGGTATGTCTCGTAGGGGCCGAGCTCGG---CAGCCAGCTCGCAGCTCGCCTCCAGGGCG 87741
Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477
|||| || || || || || |||| | || || || || || ||| |||||
Sbjct 87740 GCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTGAGCCTCGGCACTTTCAAAG 87681
Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537
|| ||| | | || || |||||||| || || ||||| || || || || || || ||
Sbjct 87680 GGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGATTCCTATTGGCCTG 87621
Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597
|| | ||| ||||| | | ||||| || | ||||| || ||||||||||| || ||
Sbjct 87620 TGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAGTAGTTAATGTCTATGATCTTG 87561
Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657
|| || ||| | || | |||||| ||| | | || || ||| ||||| | |
Sbjct 87560 TTCAGGTTTTTGACGATTACTTTGGTCACATACGCCAGCTTTTTAAAGTCAAAAGTCCGT 87501
Query 77658 TC---TATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714
|| | | ||| ||||||| | ||| || || || |||||||| || ||||||||||
Sbjct 87500 TCAGGTGTGACATACATGTTGAGAGCGATGGAGGCCAGATTACAGACCGCTACCTCATCC 87441
Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774
|| ||| |||| | || || || || || || || |||||||| |||||||| ||
Sbjct 87440 TCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTC 87381
Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834
|| ||||||||||| | ||||| | ||| || || || || | || || ||||||||
Sbjct 87380 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCT 87321
Query 77835 ATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATCG 77893
|||| || |||||||| | | ||| | | || ||| || | || ||| |
Sbjct 87320 GTCTGGGACTCGATAATGGCGTACCACAGCTGCT-GAGCCTTCACCACTCGCTTGACCCT 87262
Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953
|| ||| | || |||| || || ||| || || || |||||||| || ||||
Sbjct 87261 CCCCTCCTTCTCGTATTTGGTGTAGAGCTCCTCGAACTCCTCTCCCCAGCACTCGTCCAG 87202
Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013
|| ||||| || || || ||||||| |||||||| | || || | |||||
Sbjct 87201 CCCGGGGCACTCGTTCGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCAT 87142
Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073
|| | || || ||||| || || || ||||||| || ||| || || || || ||
Sbjct 87141 GAACAAGTCGGGGATCCACAGGGCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCC 87082
Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133
||| ||||| || || || || || || | || ||| | |||||||| || || || ||
Sbjct 87081 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACAT 87022
Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193
|| | |||| |||| || || || ||||| || | || | ||| ||||| || ||
Sbjct 87021 GGCGAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTA 86962
Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253
|||||||| ||| || | | ||||| || | ||||| ||||| | ||| || || ||
Sbjct 86961 AACTCTCAGCATGGGGACCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCC 86902
Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313
| | | || || | | | || |||||||| ||| || || || || ||
Sbjct 86901 CGTCGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGC 86842
Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373
||| | |||| || || || || || || || ||||| ||| ||||| || || ||
Sbjct 86841 GCACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 86782
Query 78374 ACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429
||||| |||| || || || ||||| ||||| || | ||| ||||| || |
Sbjct 86781 GCAGCTGGACAGCTGTGGCCTGTTG----GTTCCAGCATTGAAGAGTGTAGGAGAGGCGT 86726
Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489
| || ||||| || || || || || ||||| || || || || | || || || |
Sbjct 86725 GGGTGAACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTC 86666
Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549
|| || || || || || | ||| | ||| |||||||| | || || ||||| |
Sbjct 86665 TGTGGATGCCGACAGCCACTCTCATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGT 86606
Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609
| || ||||||| ||| || | |||| ||| || || ||||| ||||||| || || |
Sbjct 86605 TGATCTTCAACAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAAT 86546
Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGA 78669
|||| ||| |||| || | || || || ||||||| | | || || || | |
Sbjct 86545 CTCTGTCGAAAATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGGACGATGTCAAGGG 86486
Query 78670 CAGTAGTTGAAATAATAGGAGATCGTACACCATTTTT---AGGATTAACATAGTTAAATA 78726
| || || || || || || | || || ||| || || ||||| | |
Sbjct 86485 TCTCCTTGGAGATCATGGGGGA--GT-GGCGTTTGTTCAGAGGGTTGACGTAGTTGTACA 86429
Query 78727 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTA 78786
|| ||||| |||||||| || | ||| ||||| || ||||| || || || || || |
Sbjct 86428 GGTCCTCCATGACATCACTGAACACTTTCTTTGTCTCTTTGTGCAGGTTGGAGACGGCGA 86369
Query 78787 TTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTG 78846
| | || || || || ||||| || || |||| || || ||||||||| || ||||
Sbjct 86368 TCCGGGCGGCGAGGATGGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCTGCGATCTCTG 86309
Query 78847 CCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906
| || | | || | ||| | || ||||| || | || | || || || || ||||
Sbjct 86308 CGGCCAGCGTGTCCAGCTCCACTGTGGTGACTCCGCTGTACAAACCCTGGATCACCTTCA 86249
Query 78907 TGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCT-AATA 78965
| | ||| | | | || || ||||| |||| ||||| || || || || |||| ||
Sbjct 86248 TCGTGATCTGGGCCGGGTCCACAAAGTCAGAGTTCAGCCCGTAGCA-AAGCTTCTGGATG 86190
Query 78966 CGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008
||||| |||||||| || || || || ||| | || |||||
Sbjct 86189 CGAGAGGTGATTTTGTCGAACATGACGCGCTCTTGGCGTCCAT 86147
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908
|||| |||||||| |||||||| ||||||||| || | || ||||| || || || |
Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921
Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968
||| ||||| || || || ||||| ||||| | || || ||||| || | |||||||
Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861
Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019
| || | |||||||| | |||||| | | || || | |||||||||||
Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810
>seq1563
Length=18910200
Score = 89.7 bits (98), Expect = 7e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788
|| |||||| || || ||||| || ||||||| ||||||||||| || |||||||||||
Sbjct 8605809 TACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTT 8605868
Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848
| || || | |||||| || || || | || || || ||||| ||||||| || ||
Sbjct 8605869 CCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCAAT 8605928
Query 77849 AATAGATTTCCA 77860
|| || | |||
Sbjct 8605929 GATGGAGTACCA 8605940
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694635733765120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |