Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2387 535 6e-147 seq1563 89.7 7e-13 >seq2387 Length=643009 Score = 535 bits (592), Expect = 6e-147 Identities = 1303/1963 (66%), Gaps = 27/1963 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || ||| |||||| | |||||||| || || | || ||||||||||| Sbjct 88097 TTCTTCATCTCCTCACTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTC 88038 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || || || |||||||| | || || || ||||| || || ||||| || | || Sbjct 88037 ACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 87978 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 87977 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 87918 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || |||| || ||| | ||| || || || || ||||| ||||| || Sbjct 87917 AGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAGGAGCTTCCAGTCCCACAGG 87858 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || || || || || || | || || Sbjct 87857 TCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACGGGGGAGCCT 87798 Query 77361 TTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCT 77417 | ||||| || || || || || | |||| || || || ||||| |||| || Sbjct 87797 TGGTATGTCTCGTAGGGGCCGAGCTCGG---CAGCCAGCTCGCAGCTCGCCTCCAGGGCG 87741 Query 77418 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAAC 77477 |||| || || || || || |||| | || || || || || ||| ||||| Sbjct 87740 GCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTGAGCCTCGGCACTTTCAAAG 87681 Query 77478 GGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTA 77537 || ||| | | || || |||||||| || || ||||| || || || || || || || Sbjct 87680 GGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGATTCCTATTGGCCTG 87621 Query 77538 TGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTA 77597 || | ||| ||||| | | ||||| || | ||||| || ||||||||||| || || Sbjct 87620 TGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAGTAGTTAATGTCTATGATCTTG 87561 Query 77598 TTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA 77657 || || ||| | || | |||||| ||| | | || || ||| ||||| | | Sbjct 87560 TTCAGGTTTTTGACGATTACTTTGGTCACATACGCCAGCTTTTTAAAGTCAAAAGTCCGT 87501 Query 77658 TC---TATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTA 77714 || | | ||| ||||||| | ||| || || || |||||||| || |||||||||| Sbjct 87500 TCAGGTGTGACATACATGTTGAGAGCGATGGAGGCCAGATTACAGACCGCTACCTCATCC 87441 Query 77715 GCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTT 77774 || ||| |||| | || || || || || || || |||||||| |||||||| || Sbjct 87440 TCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTC 87381 Query 77775 TGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCA 77834 || ||||||||||| | ||||| | ||| || || || || | || || |||||||| Sbjct 87380 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCT 87321 Query 77835 ATCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATCG 77893 |||| || |||||||| | | ||| | | || ||| || | || ||| | Sbjct 87320 GTCTGGGACTCGATAATGGCGTACCACAGCTGCT-GAGCCTTCACCACTCGCTTGACCCT 87262 Query 77894 CCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAA 77953 || ||| | || |||| || || ||| || || || |||||||| || |||| Sbjct 87261 CCCCTCCTTCTCGTATTTGGTGTAGAGCTCCTCGAACTCCTCTCCCCAGCACTCGTCCAG 87202 Query 77954 TCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCAT 78013 || ||||| || || || ||||||| |||||||| | || || | ||||| Sbjct 87201 CCCGGGGCACTCGTTCGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCAT 87142 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || | || || ||||| || || || ||||||| || ||| || || || || || Sbjct 87141 GAACAAGTCGGGGATCCACAGGGCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCC 87082 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 ||| ||||| || || || || || || | || ||| | |||||||| || || || || Sbjct 87081 TGTGTTCTTCTTCAGCTCCAGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACAT 87022 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || | |||| |||| || || || ||||| || | || | ||| ||||| || || Sbjct 87021 GGCGAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTA 86962 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 |||||||| ||| || | | ||||| || | ||||| ||||| | ||| || || || Sbjct 86961 AACTCTCAGCATGGGGACCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCC 86902 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 | | | || || | | | || |||||||| ||| || || || || || Sbjct 86901 CGTCGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGC 86842 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 ||| | |||| || || || || || || || ||||| ||| ||||| || || || Sbjct 86841 GCACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAA 86782 Query 78374 ACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCAT 78429 ||||| |||| || || || ||||| ||||| || | ||| ||||| || | Sbjct 86781 GCAGCTGGACAGCTGTGGCCTGTTG----GTTCCAGCATTGAAGAGTGTAGGAGAGGCGT 86726 Query 78430 GCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489 | || ||||| || || || || || ||||| || || || || | || || || | Sbjct 86725 GGGTGAACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTC 86666 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 || || || || || || | ||| | ||| |||||||| | || || ||||| | Sbjct 86665 TGTGGATGCCGACAGCCACTCTCATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGT 86606 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 | || ||||||| ||| || | |||| ||| || || ||||| ||||||| || || | Sbjct 86605 TGATCTTCAACAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAAT 86546 Query 78610 CTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGA 78669 |||| ||| |||| || | || || || ||||||| | | || || || | | Sbjct 86545 CTCTGTCGAAAATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGGACGATGTCAAGGG 86486 Query 78670 CAGTAGTTGAAATAATAGGAGATCGTACACCATTTTT---AGGATTAACATAGTTAAATA 78726 | || || || || || || | || || ||| || || ||||| | | Sbjct 86485 TCTCCTTGGAGATCATGGGGGA--GT-GGCGTTTGTTCAGAGGGTTGACGTAGTTGTACA 86429 Query 78727 AATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTA 78786 || ||||| |||||||| || | ||| ||||| || ||||| || || || || || | Sbjct 86428 GGTCCTCCATGACATCACTGAACACTTTCTTTGTCTCTTTGTGCAGGTTGGAGACGGCGA 86369 Query 78787 TTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTG 78846 | | || || || || ||||| || || |||| || || ||||||||| || |||| Sbjct 86368 TCCGGGCGGCGAGGATGGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCTGCGATCTCTG 86309 Query 78847 CCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCA 78906 | || | | || | ||| | || ||||| || | || | || || || || |||| Sbjct 86308 CGGCCAGCGTGTCCAGCTCCACTGTGGTGACTCCGCTGTACAAACCCTGGATCACCTTCA 86249 Query 78907 TGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCT-AATA 78965 | | ||| | | | || || ||||| |||| ||||| || || || || |||| || Sbjct 86248 TCGTGATCTGGGCCGGGTCCACAAAGTCAGAGTTCAGCCCGTAGCA-AAGCTTCTGGATG 86190 Query 78966 CGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||||| |||||||| || || || || ||| | || ||||| Sbjct 86189 CGAGAGGTGATTTTGTCGAACATGACGCGCTCTTGGCGTCCAT 86147 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| |||||||| ||||||||| || | || ||||| || || || | Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| || || || ||||| ||||| | || || ||||| || | ||||||| Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||| | |||||| | | || || | ||||||||||| Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810 >seq1563 Length=18910200 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 77729 TATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTT 77788 || |||||| || || ||||| || ||||||| ||||||||||| || ||||||||||| Sbjct 8605809 TACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTT 8605868 Query 77789 TTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGAT 77848 | || || | |||||| || || || | || || || ||||| ||||||| || || Sbjct 8605869 CCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCAAT 8605928 Query 77849 AATAGATTTCCA 77860 || || | ||| Sbjct 8605929 GATGGAGTACCA 8605940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694635733765120