Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2387 545 3e-150 seq1563 93.3 6e-14 >seq2387 Length=643009 Score = 545 bits (604), Expect = 3e-150 Identities = 1289/1940 (66%), Gaps = 15/1940 (1%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| ||| |||||| | |||||| || || || | || ||||||||||| Sbjct 88097 TTCTTCATCTCCTCACTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTC 88038 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || || || |||||||| | || || || ||||| || || ||||| || | || Sbjct 88037 ACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 87978 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 87977 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 87918 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || |||| || ||| | ||| || || || || ||||| ||||| || Sbjct 87917 AGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAGGAGCTTCCAGTCCCACAGG 87858 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | || ||||| | ||||| || || || || ||||| | || || Sbjct 87857 TCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACGGGGGAGCCT 87798 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | ||||| ||||| | ||| || |||| || ||||| |||||||| | || || Sbjct 87797 TGGTATGTCTCGTAGGGGCCGAGCTCGGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 87738 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || || || || || || |||| | || || || || || ||| ||||| || Sbjct 87737 TAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTGAGCCTCGGCACTTTCAAAGGGG 87678 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | || || || ||||| || | ||||| || || || || || || || || Sbjct 87677 TAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGATTCCTATTGGCCTGTGG 87618 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | ||| ||||| | || ||||| || | || || || ||||| ||||| || || || Sbjct 87617 CGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAGTAGTTAATGTCTATGATCTTGTTC 87558 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTT---TCCA 76252 || ||| |||| | |||||| ||| | | || || ||| ||||| | | || Sbjct 87557 AGGTTTTTGACGATTACTTTGGTCACATACGCCAGCTTTTTAAAGTCAAAAGTCCGTTCA 87498 Query 76253 TCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 | | ||| |||| || ||||| || || || |||||||| || |||||||||| | Sbjct 87497 GGTGTGACATACATGTTGAGAGCGATGGAGGCCAGATTACAGACCGCTACCTCATCCTCG 87438 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 ||| |||| | || || ||||| || || || || ||||| || || || || || Sbjct 87437 CTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGC 87378 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 ||||||||||| |||| || | ||| || || || | | || || || ||||| || Sbjct 87377 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTC 87318 Query 76433 TGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATTATAGATTTGTATCGCTT 76491 || || |||||||| | | ||| | | || ||| || | | ||| | | Sbjct 87317 TGGGACTCGATAATGGCGTACCACAGCTGCT-GAGCCTTCACCACTCGCTTGACCCTCCC 87259 Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||| | || |||| || || | | || || || |||||||| || |||| || Sbjct 87258 CTCCTTCTCGTATTTGGTGTAGAGCTCCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCC 87199 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || || || ||||||||||||| ||||| || | || |||| ||||| || Sbjct 87198 GGGGCACTCGTTCGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCATGAA 87139 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT 76671 | || || ||||| || || || ||||||| || ||| | || || || ||||| Sbjct 87138 CAAGTCGGGGATCCACAGGGCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGT 87079 Query 76672 ATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 ||||| || || || ||||| || | || ||| | |||||||| || || || || || Sbjct 87078 GTTCTTCTTCAGCTCCAGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGC 87019 Query 76732 CATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAAC 76791 | | || |||| || || || ||||| || | || | ||| ||||| || ||||| Sbjct 87018 GAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAAC 86959 Query 76792 TCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACA 76851 ||||| ||| || | | ||||| || | ||||| ||||| | ||| || || || Sbjct 86958 TCTCAGCATGGGGACCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCGT 86899 Query 76852 TGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 76911 | | || || | | | ||| |||||||| ||| ||| ||||| || || || Sbjct 86898 CGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCA 86839 Query 76912 GCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACA 76971 | |||| |||||||| ||||| || || || || ||| ||||| || || || || Sbjct 86838 CTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCA 86779 Query 76972 GCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 ||| |||| || || || ||||| ||||| || | ||||||||| || || | Sbjct 86778 GCTGGACAGCTGTGGCCTGTTG----GTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGG 86723 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 ||||||| || || || || || ||||| || || || | || || ||||| | | Sbjct 86722 TGAACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTCTGT 86663 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 | || || ||||| || | ||| | ||| |||||||| || || | ||||| || | Sbjct 86662 GGATGCCGACAGCCACTCTCATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGTTGA 86603 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 | ||||||| ||| || | |||| ||| || || ||||| ||||||| || || |||| Sbjct 86602 TCTTCAACAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTC 86543 Query 77208 TTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCATGACAG 77267 | ||| |||| || | || || || ||| || | | | || || || | | Sbjct 86542 TGTCGAAAATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGGACGATGTCAAGGGTCT 86483 Query 77268 TGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCTT 77327 | || || || || || | | || ||| || || ||||| | | ||| | Sbjct 86482 CCTTGGAGATCATGGGGGAGTGGCGTTTGTTCAGAGGGTTGACGTAGTTGTACAGGTCCT 86423 Query 77328 CCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAG 77387 |||| || || || || | ||| ||||| || ||||| || || || ||||| || | | Sbjct 86422 CCATGACATCACTGAACACTTTCTTTGTCTCTTTGTGCAGGTTGGAGACGGCGATCCGGG 86363 Query 77388 CAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTA 77447 | || || || |||||||| || |||| || ||| |||||||| || ||||| || | Sbjct 86362 CGGCGAGGATGGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCTGCGATCTCTGCGGCCA 86303 Query 77448 AAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTA 77507 || || | || | || || |||||| | || | || || || || ||||| | | Sbjct 86302 GCGTGTCCAGCTCCACTGTGGTGACTCCGCTGTACAAACCCTGGATCACCTTCATCGTGA 86243 Query 77508 TTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCT-AATACGAGAT 77566 | | | || || ||||| || | ||||| || || || || |||| || ||||| Sbjct 86242 TCTGGGCCGGGTCCACAAAGTCAGAGTTCAGCCCGTAGCA-AAGCTTCTGGATGCGAGAG 86184 Query 77567 GTGATTTTATCAAACATGAC 77586 |||||||| || |||||||| Sbjct 86183 GTGATTTTGTCGAACATGAC 86164 Score = 105 bits (116), Expect = 1e-17 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| |||||||| || |||||| || | || ||||| || || || | Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| || || || ||||| ||||| | || || ||||| || | ||||||| Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | |||||||| | |||||| | | || || | ||||||||||| Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810 >seq1563 Length=18910200 Score = 93.3 bits (102), Expect = 6e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||||| || || || || ||||| || || || || ||||||| ||||| || ||| Sbjct 8608115 CTAAATATCTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCTATTCGTGCAGCAAGGATT 8608174 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| |||| || ||| |||||| || | || || || | ||| || | Sbjct 8608175 GCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCAGCAGTCTCCGCTGCCAGAGTGTCCAGC 8608234 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 77502 || | |||||| ||||| | || || || || || || ||||| Sbjct 8608235 TCCACAGTAGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 8608278 Score = 89.7 bits (98), Expect = 7e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 76324 TATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTT 76383 || |||||| ||||| ||||| || | ||||| || || ||||| || ||||||||||| Sbjct 8605809 TACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTT 8605868 Query 76384 TTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGAT 76443 ||||||| | |||||| || || | | || || |||||||| ||||||| || || Sbjct 8605869 CCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCAAT 8605928 Query 76444 AATAGATTTCCA 76455 || || | ||| Sbjct 8605929 GATGGAGTACCA 8605940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712900464322560