Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq16 178 2e-39 seq2 145 1e-29 >seq16 Length=2433014 Score = 178 bits (196), Expect = 2e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404 ||| | |||| ||| ||| |||||| || |||||||||||||||||||||||| || Sbjct 1109403 GCGGTATTGATGATGTTGAAGCCCACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 1109462 Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464 |||||||||||| ||| |||| | ||||||||||||||| || ||||||| ||| | Sbjct 1109463 GGGGAGCAGATGGGGTTTCCCATTAAGCCTTTGAGGGAGAAAGGGGCCCCCATCTCCACC 1109522 Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524 ||| |||| ||||||||||||||||| | ||| || ||||||| | || | ||| ||| Sbjct 1109523 ATGGTCTCTCCGAAGATGGCGTTGGGTCTGGGTTTCTCCACCAGCAGGCCTGGGTAGAGC 1109582 Query 8525 TCCACAGCCTCGACGTCTCCGTA 8547 ||||| || || || | |||||| Sbjct 1109583 TCCACGGCATCCACATGTCCGTA 1109605 Score = 132 bits (146), Expect = 7e-26 Identities = 181/253 (72%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| ||| || ||| ||| || || || Sbjct 1111317 TCACCAATCAGGATGAGCCGTGTGGTCTGGAAGAGTCTTTCATCATCCCAGTCGGGGTGC 1111376 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | | ||||| ||||| ||||||| |||||| |||| ||||| || |||||||||||| Sbjct 1111377 ACCTCCTTCAGCACATCACACACCCGGTTGTGCTCCCGCAGCCAAATGGTGGCGTACATC 1111436 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 || || ||||| ||||||||||| ||||| || || ||||| | || ||||| Sbjct 1111437 ATCAGACCAGGGACCAGGCCAAAGGCCTCGTGGCCCACAGCAAAGCGGTGAGAGTCGGGA 1111496 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | ||||| ||| ||||| || || || || || | ||||| || || || Sbjct 1111497 ACATGAGGAGGGTAGTGCATGTCGACACCCACTTCCTTTACTGTTGGGGGGTATATCTCC 1111556 Query 9472 CCGTCAATCATCT 9484 || || || |||| Sbjct 1111557 CCATCCATGATCT 1111569 >seq2 Length=6798370 Score = 145 bits (160), Expect = 1e-29 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| ||| || || || | ||| | | | |||||||| Sbjct 2261959 GGACACCACTTGGTGTTGAGACACACCAGTTTCTTCAAAGTGGAGGTTTTGACGATGTTA 2262018 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || || ||||| || ||||||||||||||||||||| | |||||||||||| ||| Sbjct 2262019 AAGCCAGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 2262078 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||||||||| |||||||| ||||| |||| ||| | || ||||||||||| ||| Sbjct 2262079 CCCAGGAGGCCTTTCAGGGAGAATGGAGCACCCATCTCCACCATACTCTCACCGAATATG 2262138 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | ||||| | || |||| || || ||| | ||| | ||||| || || | ||| Sbjct 2262139 CCACCAGGACGTGTTTTCTCCAGCAGGACTCCAGGGTAAAACTCCAACGCATCAATGTCC 2262198 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 2262199 CCGTATAG 2262206 Score = 105 bits (116), Expect = 1e-17 Identities = 171/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||||| ||||||||||| || ||||| || ||| |||||| Sbjct 2264436 TCACCAATGATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGT 2264495 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||| || | || || || ||||| || ||||| ||||| || ||||| ||||| Sbjct 2264496 TCTGCTTTAAGGATGTCACAGACTCTGTTATGCTCCCTCAGCCATATGGTGGCATACATG 2264555 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||| ||||| | | |||||| ||| ||||| |||||||| | | ||| Sbjct 2264556 GTGAGACCAGGGAGGATGCCAAATAACTCCTGACCAGTGACCAGACGCTGCTCTGGGGGG 2264615 Query 9412 A---CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATT 9468 | |||| ||| || | ||||||||| |||| || || | ||||| ||||| Sbjct 2264616 AAGCCTTC---AGGGTACACCATGTGCACAGGGACCTCCGATACTGTAGGGGGGTACATC 2264672 Query 9469 TCACC 9473 ||||| Sbjct 2264673 TCACC 2264677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716842676664320