Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq16 178 2e-39
seq2 145 1e-29
>seq16
Length=2433014
Score = 178 bits (196), Expect = 2e-39
Identities = 161/203 (79%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404
||| | |||| ||| ||| |||||| || |||||||||||||||||||||||| ||
Sbjct 1109403 GCGGTATTGATGATGTTGAAGCCCACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 1109462
Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464
|||||||||||| ||| |||| | ||||||||||||||| || ||||||| ||| |
Sbjct 1109463 GGGGAGCAGATGGGGTTTCCCATTAAGCCTTTGAGGGAGAAAGGGGCCCCCATCTCCACC 1109522
Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524
||| |||| ||||||||||||||||| | ||| || ||||||| | || | ||| |||
Sbjct 1109523 ATGGTCTCTCCGAAGATGGCGTTGGGTCTGGGTTTCTCCACCAGCAGGCCTGGGTAGAGC 1109582
Query 8525 TCCACAGCCTCGACGTCTCCGTA 8547
||||| || || || | ||||||
Sbjct 1109583 TCCACGGCATCCACATGTCCGTA 1109605
Score = 132 bits (146), Expect = 7e-26
Identities = 181/253 (72%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || | |||||| || ||||||||||| ||| || ||| ||| || || ||
Sbjct 1111317 TCACCAATCAGGATGAGCCGTGTGGTCTGGAAGAGTCTTTCATCATCCCAGTCGGGGTGC 1111376
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
| | ||||| ||||| ||||||| |||||| |||| ||||| || ||||||||||||
Sbjct 1111377 ACCTCCTTCAGCACATCACACACCCGGTTGTGCTCCCGCAGCCAAATGGTGGCGTACATC 1111436
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|| || ||||| ||||||||||| ||||| || || ||||| | || |||||
Sbjct 1111437 ATCAGACCAGGGACCAGGCCAAAGGCCTCGTGGCCCACAGCAAAGCGGTGAGAGTCGGGA 1111496
Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471
|| | ||||| ||| ||||| || || || || || | ||||| || || ||
Sbjct 1111497 ACATGAGGAGGGTAGTGCATGTCGACACCCACTTCCTTTACTGTTGGGGGGTATATCTCC 1111556
Query 9472 CCGTCAATCATCT 9484
|| || || ||||
Sbjct 1111557 CCATCCATGATCT 1111569
>seq2
Length=6798370
Score = 145 bits (160), Expect = 1e-29
Identities = 181/248 (73%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362
||||||| |||| |||| ||| || || || | ||| | | | ||||||||
Sbjct 2261959 GGACACCACTTGGTGTTGAGACACACCAGTTTCTTCAAAGTGGAGGTTTTGACGATGTTA 2262018
Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422
|| || ||||| || ||||||||||||||||||||| | |||||||||||| |||
Sbjct 2262019 AAGCCAGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 2262078
Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482
||| ||||||||| |||||||| ||||| |||| ||| | || ||||||||||| |||
Sbjct 2262079 CCCAGGAGGCCTTTCAGGGAGAATGGAGCACCCATCTCCACCATACTCTCACCGAATATG 2262138
Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542
| ||||| | || |||| || || ||| | ||| | ||||| || || | |||
Sbjct 2262139 CCACCAGGACGTGTTTTCTCCAGCAGGACTCCAGGGTAAAACTCCAACGCATCAATGTCC 2262198
Query 8543 CCGTAAAG 8550
||||| ||
Sbjct 2262199 CCGTATAG 2262206
Score = 105 bits (116), Expect = 1e-17
Identities = 171/245 (70%), Gaps = 6/245 (2%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| || || |||||||||| ||||||||||| || ||||| || ||| ||||||
Sbjct 2264436 TCACCAATGATGATGAGTCTGGTGGTCTGGAAAAGCTGCTCATCGTCCCAGGTGGGATGT 2264495
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
||| ||| || | || || || ||||| || ||||| ||||| || ||||| |||||
Sbjct 2264496 TCTGCTTTAAGGATGTCACAGACTCTGTTATGCTCCCTCAGCCATATGGTGGCATACATG 2264555
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411
|||| ||||| | | |||||| ||| ||||| |||||||| | | |||
Sbjct 2264556 GTGAGACCAGGGAGGATGCCAAATAACTCCTGACCAGTGACCAGACGCTGCTCTGGGGGG 2264615
Query 9412 A---CTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATT 9468
| |||| ||| || | ||||||||| |||| || || | ||||| |||||
Sbjct 2264616 AAGCCTTC---AGGGTACACCATGTGCACAGGGACCTCCGATACTGTAGGGGGGTACATC 2264672
Query 9469 TCACC 9473
|||||
Sbjct 2264673 TCACC 2264677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716842676664320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |