Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14 163 7e-35 seq1563 127 5e-24 >seq14 Length=1339370 Score = 163 bits (180), Expect = 7e-35 Identities = 162/208 (78%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 521256 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGCG 521199 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||||||| ||||| ||||| || |||||||||||||| ||||||| Sbjct 521198 ACACCATCGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGAATCCCTCCAGACCAGC 521139 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| ||||| || ||||| |||||||| | || || | || || ||| Sbjct 521138 AGCGTCTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 521079 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 521078 TCCAGAAGGAGTCCACCCTCCATCTTGT 521051 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| ||||| || || ||| Sbjct 521484 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 521427 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||| Sbjct 521426 ACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAGC 521367 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || |||||||| ||||| || | || || |||| || ||| Sbjct 521366 AGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCCGACTACAACA 521307 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || |||||||| Sbjct 521306 TCCAGAAGGAGTCCACCCTCCATCTTGT 521279 Score = 132 bits (146), Expect = 1e-25 Identities = 165/221 (75%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 ||||| |||| | || || ||||| || || || || || || ||||| | ||||| Sbjct 521721 GTTAAGATGC---AGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTTTGGAGGTC 521665 Query 177972 GAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 || || ||| ||||||| || || ||||| ||||| ||||| ||||||||||||| Sbjct 521664 GA--GCCCAGCGACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCC 521607 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 ||||||||||||| | || ||||| || || |||||||| ||||| || | || |||| Sbjct 521606 CTCCGGACCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGTAC-CTTG 521548 Query 178090 -CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || || |||||||| Sbjct 521547 TCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGT 521507 >seq1563 Length=18910200 Score = 127 bits (140), Expect = 5e-24 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || || || |||||||| ||||| || || || Sbjct 5351270 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGA--GCCAAGTG 5351213 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| |||||||| ||||| || || || ||||||| Sbjct 5351212 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAGC 5351153 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 5351152 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 5351093 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || ||||| || Sbjct 5351092 TCCAGAAGGAGTCCACCCTCCATCTGGT 5351065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203672469954752