Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq14 163 7e-35
seq1563 127 5e-24
>seq14
Length=1339370
Score = 163 bits (180), Expect = 7e-35
Identities = 162/208 (78%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| ||||| || || |||
Sbjct 521256 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGCG 521199
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||||||||||||||||||| ||||| ||||| || |||||||||||||| |||||||
Sbjct 521198 ACACCATCGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGAATCCCTCCAGACCAGC 521139
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || || ||||| ||||| || ||||| |||||||| | || || | || || |||
Sbjct 521138 AGCGTCTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 521079
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || ||||||||
Sbjct 521078 TCCAGAAGGAGTCCACCCTCCATCTTGT 521051
Score = 158 bits (174), Expect = 3e-33
Identities = 161/208 (77%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || |||||||| ||||| || || |||
Sbjct 521484 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 521427
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||
Sbjct 521426 ACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAGC 521367
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || |||||||| ||||| || | || || |||| || |||
Sbjct 521366 AGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGCACCCTCTCCGACTACAACA 521307
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || ||||||||
Sbjct 521306 TCCAGAAGGAGTCCACCCTCCATCTTGT 521279
Score = 132 bits (146), Expect = 1e-25
Identities = 165/221 (75%), Gaps = 9/221 (4%)
Strand=Plus/Minus
Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971
||||| |||| | || || ||||| || || || || || || ||||| | |||||
Sbjct 521721 GTTAAGATGC---AGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTTTGGAGGTC 521665
Query 177972 GAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029
|| || ||| ||||||| || || ||||| ||||| ||||| |||||||||||||
Sbjct 521664 GA--GCCCAGCGACACCATTGAAAATGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCC 521607
Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089
||||||||||||| | || ||||| || || |||||||| ||||| || | || ||||
Sbjct 521606 CTCCGGACCAGCAGAGGCTGATCTTTGCTGGCAAACAGCTGGAAGACGGCCGTAC-CTTG 521548
Query 178090 -CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| || || ||| |||| || || || || || ||||||||
Sbjct 521547 TCTGACTACAACATCCAGAAGGAGTCCACCCTCCATCTTGT 521507
>seq1563
Length=18910200
Score = 127 bits (140), Expect = 5e-24
Identities = 154/208 (74%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || || || || || ||||| || || || |||||||| ||||| || || ||
Sbjct 5351270 CAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGA--GCCAAGTG 5351213
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| ||||| |||||| |||||||| ||||| || || || |||||||
Sbjct 5351212 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAGC 5351153
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | || ||||| || || || ||||| |||||||| | || || | || || |||
Sbjct 5351152 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAACA 5351093
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || ||||| ||
Sbjct 5351092 TCCAGAAGGAGTCCACCCTCCATCTGGT 5351065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203672469954752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |