Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 3e-14 >seq9 Length=53241385 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || |||||||||||||| |||||||| || || || || |||| Sbjct 31662000 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGAAAACCATACACTGGCCCTAGGTCACCTT 31661941 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||| ||| || |||||||| | |||||||| |||||||| | Sbjct 31661940 CCTCTCTGGAGGTAAAGCCACTCTTGTCTAAAAACTCCCGGGATCCATTTGCATCCCAGA 31661881 Query 102153 T 102153 | Sbjct 31661880 T 31661880 Score = 87.8 bits (96), Expect = 1e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 |||||||||||| |||||| | || | || | |||||| |||||||| |||||||| || Sbjct 31664029 AGTGACATGAGCGATCATGTATGTGAGCAGCGCATAGCTGGCAATGTTGAATGGCACACC 31663970 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 | |||||| || |||| | ||||| || || ||||| | | |||| | || || Sbjct 31663969 CAGCCCCATGTCTCCTGAGCGCTGATAGAGCTGGCAGGACAATTCACCATTGGACACGTA 31663910 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGA 101922 ||| || | | | ||||| || || | |||| ||||| || ||||| Sbjct 31663909 AAACTGGCACAGGGCGTGACAGGGAGGAAGAGCCATATTAGGCATATCTGA 31663859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361242720305426