Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq11 84.2 3e-11 >seq1 Length=69065196 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| || ||||| || || ||||| || ||||| ||||| | ||| | Sbjct 49401943 CCTCATCTCTGCTAATCAACTCGTTTGAGAAGGTGAGGCCTGGCATCAGGCCTCTCTTCT 49401884 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| |||||||| |||||||| ||||| || || || ||||||||||| ||||||| Sbjct 49401883 TCAGCCAGAATATGGAAGCAAATGACCCAGAGAAAAAGATACCTTCTACTGCAGCAAAGG 49401824 Query 24277 C 24277 | Sbjct 49401823 C 49401823 >seq11 Length=41528230 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | || |||||| | || ||||| ||||| || || | ||| | Sbjct 33620174 CCTCATCTCTGCTGATAAGCTCATTGGAATAGGTCAGTCCTGGCATGAGACCCCTCTTCT 33620233 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| | || | || || || || || || || || ||||||||||| ||||||| Sbjct 33620234 TCAGCCAGTAAATAGCAGCGAAAGAGCCGGAGAAAAAGATACCTTCTACTGCAGCAAAGG 33620293 Query 24277 CAATAAGTCTTTCTCC 24292 | | || ||| ||||| Sbjct 33620294 CCACAATTCTCTCTCC 33620309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593707306152480