Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 105 7e-18 seq6 100 3e-16 seq11 96.9 4e-15 >seq1 Length=69065196 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || ||| | |||||||| || ||||| || || |||||||| | |||| ||| Sbjct 49400214 GAGCCCCTCCTGAGAGAGAACCCTCGGCGGTTTGTCATCTTCCCCATCGAGTACCACGAC 49400273 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| |||||||| ||||||||||| || |||||||||| |||||||| Sbjct 49400274 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCGGAGGAGGT 49400326 Score = 105 bits (116), Expect = 7e-18 Identities = 98/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||| ||||| ||| | ||| |||||||| | |||| ||| | ||||| | Sbjct 49400911 AGGTGGACCTCTCCAAAGACCTCAAGC-ACTGGGAGTCCCTGAAGGACGAGGAGCGGTAC 49400969 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| ||||| ||||| || |||||||| || ||||||||||| |||||||||||| Sbjct 49400970 TTCATCTCCCACGTCCTGGCTTTCTTCGCCGCTAGTGACGGCATCGTTAACGAGAATCTG 49401029 Query 116804 GT 116805 || Sbjct 49401030 GT 49401031 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/100 (80%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 116819 CAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAAC 116878 |||||||| || ||| | || || || || ||||| ||||| || ||||||||||||||| Sbjct 49401187 CAGGAGGTTCAAGTGACTGAAGCCCGTTGTTTCTATGGCTTCCAAATCGCCATGGAGAAC 49401246 Query 116879 GTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916 | ||||| |||||||| | || |||||||||||||| Sbjct 49401247 ATCCACTCTGAAATGTA--CAGCCTGCTCATCGACACGTA 49401284 >seq6 Length=40768737 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCG 117224 |||| ||||| || ||||| ||||| || ||||| || ||||||| || | Sbjct 2466462 AGGGGCTGCACTGTGACTTCGCCTGCCTGATGTTCCGCCACCTGGTGCACAAGCCCTCGG 2466403 Query 117225 CGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 ||||||||| | | || | ||| | ||||| || |||||||||||| ||||| || Sbjct 2466402 AGGCGCGCGTGAAGCAGGTGGTCGCGGACGCCGTGGCCATCGAGCAGGAGTTCCTGACGC 2466343 Query 117285 AAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGT 117344 | |||||||| || || | || | || |||| |||| || |||||||||| Sbjct 2466342 AGGCGCTGCCCGTCAACCTCATCGGCATGAACTGCGCGCTGATGAAGCGCTACATCGAGT 2466283 Query 117345 TCGTCGCCGACAGGCTGCTGCTCGAGCTGG 117374 |||| || ||| | |||||||| ||||||| Sbjct 2466282 TCGTGGCAGACCGACTGCTGCTGGAGCTGG 2466253 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||| ||||||||||| ||| | ||| |||||||| || |||| | | ||| | Sbjct 2468104 AGGTCGACCTGTCCAAAGACCTGCAGC-ACTGGGAGAGCCTGAAGCAGGAAGAGAAGTAC 2468046 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| ||| || |||||||| || || || ||||||||||| || || ||||||||| Sbjct 2468045 TTCATCTCGCATGTCCTGGCCTTCTTTGCGGCGAGCGACGGCATTGTTAATGAGAATCTG 2467986 Query 116804 GT 116805 || Sbjct 2467985 GT 2467984 >seq11 Length=41528230 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 116591 GAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGACATGTGGCGCATGTAC 116650 |||||||| | |||||| || ||||||||||| || ||||| ||||| ||| ||||| Sbjct 33623543 GAGAACCCGCTCCGGTTTGTCATTTTCCCCATTCAGTACCCTGACATTTGGAAGATGTAT 33623484 Query 116651 AAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 ||| |||| ||||||| |||||||| ||||| ||||| Sbjct 33623483 AAACAGGCACAGGCGTCATTCTGGACTGTCGAAGAGGT 33623446 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTT 116859 || |||| |||| ||| |||||||||||||| ||||||| || || || ||||| || Sbjct 33621778 TCAGGTCCAGCGATTCAGCCAGGAGGTGCAGGTCCCCGAGGCCCGATGTTTTTACGGTTT 33621719 Query 116860 TCAGATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||| ||| |||||||||||||| || ||||| Sbjct 33621718 CCAGATCCTCATCGAGAACGTGCACTCTGAGATGTA 33621683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515206796097760