Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq20 105 8e-18 seq6 104 3e-17 seq132 100 3e-16 seq17 100 3e-16 seq14 100 3e-16 seq71 98.7 1e-15 seq8 98.7 1e-15 seq1 98.7 1e-15 seq27 95.1 1e-14 seq22 89.7 6e-13 seq9 87.8 2e-12 seq526 86.0 7e-12 seq387 86.0 7e-12 seq156 86.0 7e-12 >seq20 Length=14739584 Score = 105 bits (116), Expect = 8e-18 Identities = 86/103 (83%), Gaps = 6/103 (6%) Strand=Plus/Minus Query 60039 AACAAATTAACGTTTATGAAAAATTTT----CTCCTCGGCAGGGAATCGAACCCTGGTCT 60094 || |||| || ||| |||||||||| |||| || | ||||||||||||| ||||| Sbjct 645982 AAAAAATGAA--TTTGAGAAAAATTTTGCACCTCCCCGTCGGGGAATCGAACCCCGGTCT 645925 Query 60095 CCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||||||||||||| |||||||||||||||||| |||||| Sbjct 645924 CCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 645882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 622561 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 622502 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 622501 TACTAACGAGGA 622490 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| |||||||||||||| |||||| ||||| |||| Sbjct 11403239 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGATAGGCGGGGATACTTACCA 11403298 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 11403299 CTATACTAACGAGGA 11403313 >seq6 Length=40768737 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2283085 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2283026 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 2283025 TACTAACGAGGATTG 2283011 >seq132 Length=109186 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 69156 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 69215 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 69216 ATACTAACGAGGA 69228 >seq17 Length=32595267 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 29087521 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 29087462 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 29087461 ATACTAACGAGGA 29087449 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3154984 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3155043 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 3155044 TACTATCGAGGAT 3155056 >seq14 Length=32369425 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 11916538 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 11916479 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 11916478 CTATACTAACGAGGA 11916464 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 11631434 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11631375 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11631374 TACTAACGAGGA 11631363 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 18685026 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 18685085 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 18685086 ATACTAACGAGGAGTG 18685101 >seq71 Length=267052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 66033 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 65974 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 65973 TACTAACGAGGA 65962 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 108139 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 108198 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 108199 TACTAACGAGGA 108210 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 196235 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 196294 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 196295 ATACTAACGAGGA 196307 >seq8 Length=50348508 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7734312 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7734253 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 7734252 TACTAACGAGGA 7734241 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/84 (86%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 60057 AAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||||| |||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 7734931 AAAAATTTCAGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 7734990 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||| |||||| Sbjct 7734991 TACTTACCACTATACTAACGAGGA 7735014 >seq1 Length=69065196 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 639721 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 639662 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 639661 TACTAACGAGGA 639650 >seq27 Length=15260519 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 ||||||| | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 10160214 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTGCCACTA 10160273 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 10160274 TACTAACGAGGA 10160285 >seq22 Length=11620783 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 6820278 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTGCCACTA 6820337 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 6820338 TACTAACGAGGA 6820349 >seq9 Length=53241385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60068 CCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATA 60127 || || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||| Sbjct 38869860 CCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTGCCACTATA 38869801 Query 60128 CTACCGAGGATTGAATATATA 60148 ||| |||||| ||||||| Sbjct 38869800 CTAACGAGGAAGACATATATA 38869780 >seq526 Length=11073 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||||||| | |||||||||||||| |||||| ||||||||||||| Sbjct 1348 CTCCCCGTCGGGGAATCGAATACCGGTCTCCCGCGTGATAGGCGGGGATACTCACCACTA 1407 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1408 TACTAACGAGGA 1419 >seq387 Length=19242 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| | |||||||||||||||||||||||||||||| |||||| ||||| Sbjct 18964 AAAAGCTACTCCCCATCAGGGAATCGAACCCTGGTCTCCCGCGTGATAGGCGGGGATACT 19023 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||| | |||| Sbjct 19024 TGCCACTATACTAACAAGGA 19043 >seq156 Length=83388 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | ||||||| | |||||| |||||| ||||||||||||||||||| | ||||| Sbjct 38607 AAAAGCTACTCCTCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCAGGGATACT 38666 Query 60118 CACCACTATACTACCGAGGA 60137 ||||||||||| |||||| Sbjct 38667 TGCCACTATACTAACGAGGA 38686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571803833491280