Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq3 307 7e-79 seq2 89.7 4e-13 >seq3 Length=56798892 Score = 307 bits (340), Expect = 7e-79 Identities = 630/916 (69%), Gaps = 24/916 (3%) Strand=Plus/Minus Query 107668 AAAGGAAGTTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTAC 107726 |||| |||||||| ||| ||||| ||||| ||||| || ||||||||||||||||||| Sbjct 53637691 AAAGAAAGTTCATCACA-TTCCCGCTGAGCAAAGAGGAAAAAGACTTCCCCATTGCCTAC 53637633 Query 107727 TCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCC 107786 || |||||| ||||||| || ||||| | ||||| |||| ||||| ||| | || || Sbjct 53637632 TCCATGGTGATCCATGAAAAAATTGAGACGTTTGAGAGGCTTCTGCGCGCCATATACACC 53637573 Query 107787 CCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCG 107846 |||||||| | ||||| || ||||||||| ||| || ||||| ||||| | || Sbjct 53637572 CCTCAGAATGTGTACTGCGTGCACGTGGATCAGAAATCTTCAGAGGAGTTCAAGAATGCT 53637513 Query 107847 GTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906 || || |||||| |||||||| || ||||| || ||||||| || ||| ||| Sbjct 53637512 GTAAAAGCCATTGCGTCCTGCTTTCCAAATGTATTTTTGGCCAGAAAACTGGAAAAGGTC 53637453 Query 107907 GTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAG 107966 | || ||| | ||||| || ||||| || ||| ||||||| ||||| |||||||| | Sbjct 53637452 ATCTACGCCACTTGGTCAAGGGTGCAGGCAGACTTGAACTGCATGGAGGACTTGCT---G 53637396 Query 107967 AGCTCA---GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAG 108023 | |||| || | ||||| ||| | || || || ||||| || || || ||||| || Sbjct 53637395 AACTCAACTGTACAATGGAGGTATCTGCTCAACACCTGCGGCACCGATTTTCCCATTAAA 53637336 Query 108024 ACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCT 108083 ||||| || || || | |||||||| | || || | |||||| | || || Sbjct 53637335 ACCAACCTGGAAATCGTGCATGCCCTCAAAGCCCTCAACGGCAGGAACAGCCTTGAATCA 53637276 Query 108084 GAGGTACCTTCTGAGTC-CaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGA-CA 108141 || || | | ||| | |||||| | |||||| |||| || ||||| | || || Sbjct 53637275 GA-GTCCACCCCGAGGCATAAAAAAGACCGCTGGTTGTACCATTACGAGGTCAAGGATCA 53637217 Query 108142 CA-CTGTA-CCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCAC 108199 || ||| || | ||| | || ||||||| || | ||||||||| | Sbjct 53637216 CATAAGTAGGACTGAAACCAAAAAGAGCCCCCCTCCCATTG---GCTCCCCCATGTTCTC 53637160 Query 108200 AGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA 108259 || || || || ||||| | | | | |||||| |||| || || || ||||| | Sbjct 53637159 CGGTAACGCATACTTTGTCGTGACCAGGGATTTTGTCAAACACGTGTTTGAAAACCCGGA 53637100 Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319 | || | ||| ||||||||| || |||||||| ||||| || || ||||| ||||| Sbjct 53637099 GACACAGAAACTACTTGAATGGGAAAAGGACACCTACAGCCCTGATGAGCACCTTTGGGC 53637040 Query 108320 CACCCTTCAGCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377 || || ||| | || || | || |||| || || ||| | | || || | ||| Sbjct 53637039 AACGCTGCAGAGGATG-TCTG-GGGTGCCGGGGTCGAATCCCATCAACGAGAAATTCCAC 53636982 Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGA-TGT 108436 | ||| ||||||| |||||| || | || || || ||| |||| || || || | Sbjct 53636981 ACCTCCGACATGATTGCCATTGCTCGACTGGTAAAATGGGAGTATTTGGAAGGCGACATT 53636922 Query 108437 CAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTA 108496 ||| | || | | ||| ||| ||| | || | || || || | |||| | || Sbjct 53636921 CAG-AAAGGATCTTCCTATCCACGCTGTACGGGTGTTCACCGCAGATCGGTCTGTGTCTA 53636863 Query 108497 CGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 || | |||||||| ||||||| | || | ||||||||||| || || |||||||| Sbjct 53636862 TGGATCTGGGGACCTCCACTGGATGTTGCATCAACATCACCTCTTTGCCAATAAGTTTGA 53636803 Query 108557 -CCCGAGGGTGGATGA 108571 ||||| |||||||| Sbjct 53636802 TCCCGA-AGTGGATGA 53636788 >seq2 Length=68575853 Score = 89.7 bits (98), Expect = 4e-13 Identities = 238/360 (66%), Gaps = 4/360 (1%) Strand=Plus/Plus Query 107671 GGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGA 107730 |||||| |||| || |||| || || ||||| ||| ||||||||||| || || Sbjct 34660659 GGAAGTACATAACCTTTTCACTCAGCAAGGAAGAAAAAGAATTCCCCATTGCTTATTCTT 34660718 Query 107731 TGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTC 107790 |||| || ||| | || || || | |||||| | || || || || | ||||| |||| Sbjct 34660719 TGGTTGTTCATCACAAAATCGATACATTTGAAAGACTCCTAAGATCCATTTATGCACCTC 34660778 Query 107791 AGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCA 107850 | || | |||||| |||| ||||| || || |||| | ||| || || || | Sbjct 34660779 AAAATGTTTACTGTATCCATGTGGACAAAAAATCTCCAGTATCCTTCTTAGTTGCAGTTA 34660838 Query 107851 AGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTT 107910 | | || || ||||| ||||| || | |||||| | || | || | | Sbjct 34660839 AAGGTATAGCATCTTGCTTTGATAATGTTTTTGTTGCCAGTCAATTAGAAAGTGTCATCT 34660898 Query 107911 ATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCT 107970 | || |||| || || || || || | ||||| ||| ||||| || | |||| | Sbjct 34660899 ACGCAAGCTGGGGTAGGGTCCAGGCAGATATTAACTGCATGAAAGACCTG-TACAGA-CA 34660956 Query 107971 CAGTGCCA--TGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 |||| | | ||||||||||| | ||| || || | || ||||| ||||| ||||| Sbjct 34660957 CAGTTCAAGCTGGAAGTACTTCATCAATCTCTGTGGCATGGATTTCCCTATAAAAACCAA 34661016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348260625042924