Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 >seq3 Length=56798892 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||||||||||| |||||||| || | || || || |||||||| ||||| || || Sbjct 12782452 CACCTCGTCTTTGCTGGTGTACTCCACCACCTCTGTGCACAGATTGCTGCACTTGATGGT 12782511 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 |||| || ||||||||| || | ||||||| ||| ||||| | |||||| || || Sbjct 12782512 ACCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCACGCATCTTTGTAAACCATGTAGGGGGT 12782571 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || ||||| ||| |||||||||||||| ||||| Sbjct 12782572 TCCGGTCTCCGTCTGAGACTCGATGATCGCGTACCACA 12782609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755668173920