Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq11 87.8 2e-12 seq3 84.2 3e-11 >seq1 Length=69065196 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| || ||||| || || ||||| || ||||| ||||| | ||| | Sbjct 49401943 CCTCATCTCTGCTAATCAACTCGTTTGAGAAGGTGAGGCCTGGCATCAGGCCTCTCTTCT 49401884 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| |||||||| |||||||| ||||| || || || ||||||||||| ||||||| Sbjct 49401883 TCAGCCAGAATATGGAAGCAAATGACCCAGAGAAAAAGATACCTTCTACTGCAGCAAAGG 49401824 Query 36300 C 36300 | Sbjct 49401823 C 49401823 >seq11 Length=41528230 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | || |||||| | || ||||| ||||| || || | ||| | Sbjct 33620174 CCTCATCTCTGCTGATAAGCTCATTGGAATAGGTCAGTCCTGGCATGAGACCCCTCTTCT 33620233 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| | || | || || || || || || || || ||||||||||| ||||||| Sbjct 33620234 TCAGCCAGTAAATAGCAGCGAAAGAGCCGGAGAAAAAGATACCTTCTACTGCAGCAAAGG 33620293 Query 36300 CAATAAGTCTCTCTCC 36315 | | || ||||||||| Sbjct 33620294 CCACAATTCTCTCTCC 33620309 >seq3 Length=56798892 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 65792 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 65851 ||| ||||| ||||| || ||||||||||| || | || || || || ||||| |||| Sbjct 12782482 CTCTGTGCACAGATTGCTGCACTTGATGGTACCCAGGTTCTGCTGGTTGCTCTTCCTGTT 12782541 Query 65852 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 65911 |||||||| || |||| ||| | || || || || || ||||||| || || ||||| Sbjct 12782542 GCACGCATCTTTGTAAACCATGTAGGGGGTTCCGGTCTCCGTCTGAGACTCGATGATCGC 12782601 Query 65912 TTTCCA 65917 | ||| Sbjct 12782602 GTACCA 12782607 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | || || ||||||||||| ||||| || || || || || ||| Sbjct 12785014 GTCCCAGCATTGAAGAGTGTGGGCGAAGCGTGCGTGAACCACTTCTCCGACAGCAGGTTG 12785073 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||| |||||||| | ||| || ||| | ||||| || || | || | ||| | | Sbjct 12785074 TACGTTTCAATAGCAGCGTCAATGTCCAGCTTGTGAATCCCGACAGACACTCTCATCAGC 12785133 Query 66576 ATGTGCTGAGG 66586 ||||||||||| Sbjct 12785134 ATGTGCTGAGG 12785144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156954489840