Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 2e-15 seq10 82.4 5e-11 >seq1 Length=69065196 Score = 96.9 bits (106), Expect = 2e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || ||||| || | || |||||||||||||| |||||||||||| Sbjct 49401821 TGGCCTTTGCTGCAGTAGAAGGTATCTTTTTCTCTGGGTCATTTGCTTCCATATTCTGGC 49401880 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| | || |||||||| | | || || ||||||||||||||| | || | Sbjct 49401881 TGAAGAAGAGAGGCCTGATGCCAGGCCTCACCTTCTCAAACGAGTTGATTAGCAGAGATG 49401940 Query 22868 A 22868 | Sbjct 49401941 A 49401941 >seq10 Length=42345482 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 20871 CTGTTCGCCCGTGCAGGCGCTGCCAATGTTCAGGCAACATTGACGACAACCCAGTAGGAC 20930 ||||||| |||||| | || || || | |||||||||| |||| | || || Sbjct 1191179 CTGTTCGGTCGTGCAATCCGTGTCAGTGCAATGACAACATTGACCCCAACGCTGTGGGCA 1191120 Query 20931 AGTGTAATCCTGAGACTGGCGAATGCCTGCGCTGCCTGCATAATACCGATGGATTCTTCT 20990 | ||| | | |||||||| || |||||| ||| | |||| |||||||| ||||||| Sbjct 1191119 ACTGTGACCGGGAGACTGGAGAGTGCCTGAAATGCATCTATAACACCGATGGGTTCTTCT 1191060 Query 20991 GTGACAAATGCACCAGGGGCTATTATGGCAACGCCCTG 21028 ||||| ||||| ||||| | ||||||| ||||| Sbjct 1191059 GTGACCGATGCAAAGAGGGCTTCTTTGGCAACCCCCTG 1191022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356225238084178