Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 >seq1 Length=69065196 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||| | |||||||| || || | |||||||||| |||| || | Sbjct 49401943 CCTCATCTCTGCTAATCAACTCGTTTGAGAAGGTGAGGCCTGGCATCAGGCCTCTCTTCT 49401884 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | |||||||||||| || || || || || || ||||||||||| | Sbjct 49401883 TCAGCCAGAATATGGAAGCAAATGACCCAGAGAAAAAGATACCTTCTACTGCAGCAAAGG 49401824 Query 14014 C 14014 | Sbjct 49401823 C 49401823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716450548400