Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq11 102 1e-16 >seq1 Length=69065196 Score = 123 bits (136), Expect = 3e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| || ||||| || || ||||| || ||||| ||||| | ||| | Sbjct 49401943 CCTCATCTCTGCTAATCAACTCGTTTGAGAAGGTGAGGCCTGGCATCAGGCCTCTCTTCT 49401884 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || |||||||| ||||| || ||||| ||||||||||| ||||||| Sbjct 49401883 TCAGCCAGAATATGGAAGCAAATGACCCAGAGAAAAAGATACCTTCTACTGCAGCAAAGG 49401824 Query 42207 C 42207 | Sbjct 49401823 C 49401823 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 41758 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCC 41817 |||||| || ||||| | ||||| || || || || || ||||| || || |||||||| Sbjct 49403083 AGACATGACGCCCATCCTCTGGTACTCCCCTACGCGCTTCTCGAAGAAGTTGGTCTTTCC 49403024 Query 41818 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 41853 ||||| || || ||||||||||| ||||| ||||| Sbjct 49403023 TTCCAGGGAGATGTTTTCCATGAAGTCAAAAGGATT 49402988 >seq11 Length=41528230 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | || |||||| | || ||||| ||||| || || | ||| | Sbjct 33620174 CCTCATCTCTGCTGATAAGCTCATTGGAATAGGTCAGTCCTGGCATGAGACCCCTCTTCT 33620233 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| | |||| || || || || || || ||||| ||||||||||| ||||||| Sbjct 33620234 TCAGCCAGTAAATAGCAGCGAAAGAGCCGGAGAAAAAGATACCTTCTACTGCAGCAAAGG 33620293 Query 42207 CAATAAGTCTCTCTCC 42222 | | || ||||||||| Sbjct 33620294 CCACAATTCTCTCTCC 33620309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123042323760