Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 104 5e-17 seq19 89.7 1e-12 >seq1 Length=69065196 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || || ||||| || ||||||||||| || || || ||||| ||||| | || || ||| Sbjct 49401820 GTGGCCTTTGCTGCAGTAGAAGGTATCTTTTTCTCTGGGTCATTTGCTTCCATATTCTGG 49401879 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||| |||||||| |||||||| | || ||||| ||||| ||||| ||||| || Sbjct 49401880 CTGAAGAAGAGAGGCCTGATGCCAGGCCTCACCTTCTCAAACGAGTTGATTAGCAGAGAT 49401939 Query 269258 GA 269259 || Sbjct 49401940 GA 49401941 Score = 95.1 bits (104), Expect = 3e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || || |||||||| || ||||||||||| | || || |||| ||| | || |||||| Sbjct 57658162 GCCTTGTGGTGGTACTACGTCTCTAAAGGAGTGGAGTATTTAGACACTGTGTTTTTCATC 57658103 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || || ||||||||||| || | || ||||| || || || || || | || ||||| Sbjct 57658102 CTGCGCAAGAAATTTAACCAGGTCAGCTTTCTGCACGTCTACCACCACTGCACAATGTTC 57658043 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 || | | ||||| || || || ||| | || ||||| ||| Sbjct 57658042 ACCCTCTGGTGGATTGGCATCAAGTGGGTGGCTGGAGGGCAA 57658001 >seq19 Length=9910484 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| || || ||||| || | ||| || || || || ||||| Sbjct 3882388 CCTTCCTTATCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCACTGGGCTCAACCTCA 3882447 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || || || ||||| || ||||| ||||| |||||||| || Sbjct 3882448 AGGGTGATGGTTTTGCCAGTCAGAGTTTTCACAAAGATCTGCATCTT 3882494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151369987085608