Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq9 132 3e-26 >seq9 Length=53241385 Score = 132 bits (146), Expect = 3e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||| |||||||| || | ||||||||| || || ||||| || |||||||| Sbjct 31662005 CATGTCTTTGTATTCTGCTCCAAAGTGCCTCCACTGAAAACCATACACTGGCCCTAGGTC 31661946 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTC 25892 || || || ||| |||||| ||||| || ||||| || | ||| ||||| || || Sbjct 31661945 ACCTTCCTCTCTGGAGGTAAAGCCACTCTTGTCTAAAAACTCCCGGGATCCATTTGCATC 31661886 Query 25893 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||| || || |||||| ||| ||||| ||||||||||| || || Sbjct 31661885 CCAGATTTTGACTCCCTTCATGGACAGCTCCTTGGAGTTTGTAGAGCC 31661838 Score = 102 bits (112), Expect = 6e-17 Identities = 121/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 ||||| || || | ||| |||||||| ||||| || |||||||| ||||| || || Sbjct 31664034 AGCCCAGTGACATGAGCGATCATGTATGTGAGCAGCGCATAGCTGGCAATGTTGAATGGC 31663975 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||||| || || | ||| |||||||| || || | || | | | Sbjct 31663974 ACACCCAGCCCCATGTCTCCT-GAGCGCTGATAGAGCTGGCAGGACAATTCACCATTGGA 31663916 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATA 25653 |||||||||||| |||| || || || ||||||||||| ||| Sbjct 31663915 CACGTAAAACTGGCACAGGGCGTGACAGGGAGGAAGAGCCATA 31663873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340129615907598