Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq10 152 7e-32 seq21 89.7 7e-13 >seq10 Length=42345482 Score = 152 bits (168), Expect = 7e-32 Identities = 200/277 (72%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8699 CCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCC 8758 || ||||| |||| ||| || |||| || | | ||| | || || || ||||||| Sbjct 484193 CCCTTGACATTGCGACATACAAGAGTTTGTAGTGAGGCAGTATTCACAATGTCAAACCCA 484252 Query 8759 ACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATG 8818 || | ||| ||||||||||| ||||||||||| | ||||||||||| || |||| Sbjct 484253 ACTTTTCCACCGAAGGTGCTTGGTTTCCAGTATTCTGGGGAGCAGATTGGATTACCCATC 484312 Query 8819 AGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTG 8878 ||||| || || ||| | |||||||||| || | ||| |||| || || ||||| || Sbjct 484313 AGGCCCTTCAGAGAATATGGAGCCCCCATTTCCACCATGGTCTCCCCAAAAATGGCATTA 484372 Query 8879 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAA 8938 || | ||||| || | || || || | |||| ||||| || || |||||||| || Sbjct 484373 GGCCTAGGCTTCTCAATCAGCAAACCAGGATACAGCTCCATGGCATCAATGTCTCCATAG 484432 Query 8939 AGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | |||||||| || |||||||| ||||||| Sbjct 484433 AGCTCTTCTAGTTCGGCCGCCATTTCCTTCTCTCCTG 484469 Score = 149 bits (164), Expect = 9e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 9657 CCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGAT 9716 ||| ||||| || || || |||| ||||| ||||||| ||| ||||| || |||||||| Sbjct 486119 CCACTCTGGGTGCTCCTGTCTCAGGACATCACACACTCGGTTATGTTCTCTCAGCCAGAT 486178 Query 9717 AGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 ||| || ||||||||||| || ||||| |||||||| || || || || || || | | Sbjct 486179 AGTGGCATACATCATGAGCCCTGGCACAAGGCCAAAGGCGTCGTGCCCCACTGCGAATCT 486238 Query 9777 CATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGG 9836 | ||||||||| | ||||| ||| ||||| ||||||||| || || ||| | || Sbjct 486239 GTGCTCTTCGGGCACATGAGGAGGGTAGTGCATGTCCACCTGGACGTCCTTCACCAAAGG 486298 Query 9837 GGGATACATTTCACCGTCAATAATCTG 9863 || |||||||| || || || ||||| Sbjct 486299 AGGGTACATTTCGCCATCGATCATCTG 486325 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 10280 AGGAAAGTCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAAT 10339 || ||| |||||| ||| || | ||| || || || || | || || || || || | Sbjct 487532 AGAAAACTCACCTGCGACTCCCATAGGCGTAGGGCACTCTTTGGGGACTGGTGGAAGTGT 487591 Query 10340 CCTTGCGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTT 10399 ||||| |||||| ||||| || || ||||||||||| || ||| || || | | ||| Sbjct 487592 CCTTGTGTAATAAGAGAGGTTTGAAAAAGCTTCCCAACTCTTGTAGTCATAAACTGAGTT 487651 Query 10400 GTAGATGGGAGGGCTGTCAATCAAATCGGATCTACCTG 10437 ||| | ||||| || |||||||||| || ||| ||| Sbjct 487652 GTAAGTAGGAGGACTCTCAATCAAATGTGACCTAGCTG 487689 >seq21 Length=15143781 Score = 89.7 bits (98), Expect = 7e-13 Identities = 183/268 (68%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 9323 TTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTA-ATGCCGTGGGTC 9381 |||| |||||||||||||||| | || ||||| || || || | | || | ||| Sbjct 4329712 TTACCTGGCCAGCTATTTGTTTAGAAAAAGATTCCACAAG-TGTTTCCACTCCATAGGTG 4329654 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCA---TACTTTGTTTTATCAATC 9438 | ||| ||||| ||||| | | |||| ||||| | | || | ||| || Sbjct 4329653 AAGAGAATGGAGGTGTTGAAGAGAAAGTCTTTGTAGGTAATCTCCTCTCCTTTG---ATT 4329597 Query 9439 TCAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9498 | ||| || ||||| |||| |||||||||||||| ||| ||||| | || Sbjct 4329596 TGAAAACTGTCTGGCATCAGAGGGTGCCAGTGATACAAGTGGTTGAACTCCACAGCAATT 4329537 Query 9499 CGATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAG 9558 | ||| |||||||||| | |||||| || || ||||| | |||| || || ||| Sbjct 4329536 CTGTTTCTGTACTGGAACTGATCACCAAACAGGAGCTCGGGGTCAAACTTCAGCTTCAAG 4329477 Query 9559 TGGTAGCCGCTGAGCTGCTGAACATACT 9586 |||||||| || || ||||| ||||||| Sbjct 4329476 TGGTAGCCACTCAGGTGCTGGACATACT 4329449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708507742265440