Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq10 132 8e-27 seq4 93.3 7e-15 >seq10 Length=42345482 Score = 132 bits (146), Expect = 8e-27 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || || | ||| ||||| |||||||| |||||||||||||| || || Sbjct 10990953 CGCTAAGCCACACCGAAAGGTTCTCCGAGACAACATCCAGGGAATCACCAAGCCCGCCAT 10991012 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||||| |||||||||| ||||| |||| | | |||| || |||| Sbjct 10991013 TCGCCGCCTGGCTCACAGTGGTGGAGTGAAGCGGATCTCCAGGCTTATCTACGAGGAGAC 10991072 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| || |||| | ||||| ||| |||||||| ||||| || ||| ||||| Sbjct 10991073 CTGTGGGGTGCTGAAAGTGTTCCTGGAGAACGTTATCCGCGATGCCGTCACCTACACCGA 10991132 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| |||| ||||||| | || ||||| |||| || || || Sbjct 10991133 GCATGCCAAGAGGAAGACCATCACTGCCATGGACGTGGTGTATGCGCTGAAGCGCCAGGG 10991192 Query 16672 CCG 16674 ||| Sbjct 10991193 CCG 10991195 >seq4 Length=73198282 Score = 93.3 bits (102), Expect = 7e-15 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| ||||| ||| | || |||||||| |||||| ||||||| || || Sbjct 16082512 CGCGAAGCGTCACCGCAGGGTTCTCCCCGACAACATCCAGGGAATCGCCAAGCCCGCCAT 16082571 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || | ||||| || ||||| ||||| ||| | | ||| || || |||| || |||| Sbjct 16082572 CCCGCTCCTGGCCCGCCGTGGCGGAGTGAAGTGGGCCTCCGGGCTGATCTACGAGGAGAC 16082631 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCG---TTATCCATGATGCTTTCCACTATAC 16608 || | || ||||| | ||||| | ||| | |||| | | | || ||| || Sbjct 16082632 CCGCGGGGTGCTGAAGGTGTTCCTGGACGCCGCGGTCATCCGTAACGGCGTCACCTACAC 16082691 Query 16609 CGAGCACGCTAAACGTAAGACTGTCACCTCCA 16640 ||||||||| | ||||| |||||| ||| Sbjct 16082692 CGAGCACGCCGCTGGGAAGACCGTCACCACCA 16082723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073439044718