Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq20 118 7e-22 seq98 109 4e-19 seq3 109 4e-19 seq6 98.7 7e-16 seq28 89.7 3e-13 seq7 82.4 5e-11 >seq20 Length=14739584 Score = 118 bits (130), Expect = 7e-22 Identities = 82/93 (88%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| |||||||||||| ||||| || |||||||| Sbjct 3337074 AAGCCCGTTCCCTTGGCTGTGGTTTGGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 3337015 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||||||||||||||||||| || Sbjct 3337014 TCATCCATTCATGCGCGTCACTAATTAGATAAC 3336982 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 |||||||||||||||||||||||||| |||||||||||| ||||| || ||||||| Sbjct 3386078 TAAGCCCGTTCCCTTGGCTGTGGTTTGGCTAGATAGTAGGTAGGGGCAGTGGGAATCTCG 3386019 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 || |||| |||||| |||||||| |||||||||| Sbjct 3386018 TTCATCCATTCATGTGCGTCACTTATTAGATGAC 3385985 Score = 113 bits (124), Expect = 3e-20 Identities = 80/92 (87%), Gaps = 5/92 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct 3288073 AAGCCCATTCCCTTGGCTGTGGTTTCACTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 3288132 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGA 25988 |||||| ||||||| ||||||| ||||||||| Sbjct 3288133 TAATCCATTCATGCACGTCACTTATTAGATGA 3288164 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||| ||||||||||||||||| ||||| || || ||||| Sbjct 3243522 AAGCCCGTTCCCTTGGCTGTTGTTTCGCTAGATAGTAGGTAGGGACAGTGGAAACCTCGT 3243581 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||| ||||||||||||| ||| |||| Sbjct 3243582 TCATCCATTCATTCGCGTCACTAATTGGATAACGA 3243616 >seq98 Length=161239 Score = 109 bits (120), Expect = 4e-19 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 ||| |||||||||||||||||||||||||||||||| ||||| || ||||| || Sbjct 8327 GCCTGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTTATTC 8386 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||| ||||||||||||||||||| Sbjct 8387 ATCCATTCATGCGTGTCACTAATTAGATGACGA 8419 >seq3 Length=56798892 Score = 109 bits (120), Expect = 4e-19 Identities = 80/93 (86%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || || |||||||||||||||||||| ||||||||||| ||||| || |||||||| Sbjct 24541956 AACCCTGTTCCCTTGGCTGTGGTTTCACTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 24542015 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||| ||||||||||||||||| Sbjct 24542016 TCATCCATTCATGCGTGTCACTAATTAGATGAC 24542048 >seq6 Length=40768737 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 18661406 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGT 18661465 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 18661466 GCCGGTATTTAGCCTTA 18661482 >seq28 Length=5380255 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||| Sbjct 4253893 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTCGGCTAATGGTCTCGT 4253952 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 4253953 GCCGGTATTTAGCCTTA 4253969 >seq7 Length=50812227 Score = 82.4 bits (90), Expect = 5e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || || | ||| || || || || || || ||||| ||||||||| || || || Sbjct 6513357 CCCACCAAGTTTTTTGGTTGTGAGCTGGGAGCACAGACCCAGTTTGATGCTAAGAATGAC 6513416 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 |||| ||| || || ||||| ||| | | |||||||| || | || || || || Sbjct 6513417 CGCTACATTGTCAATGGATCTCATGAGGCGAATAAGCTGCAAGATATGCTGGATGGATTC 6513476 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || || || ||||||||||||| || || || || ||||| || || || Sbjct 6513477 ATCCGAAAATTTGTGCTGTGTCCAGAGTGTGACAATCCGGAAACTGACCT 6513526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334939337742506