Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq22 96.9 6e-15 seq1 91.5 3e-13 seq6 86.0 1e-11 >seq22 Length=11620783 Score = 96.9 bits (106), Expect = 6e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || ||||| || ||||| || ||||| ||||||||| |||||||||||| Sbjct 3897205 TCAGGAGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTG 3897264 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || |||| ||||||||| || ||||| || |||||||| || |||||||| Sbjct 3897265 GGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACAAAGATCTGCAT 3897320 >seq1 Length=69065196 Score = 91.5 bits (100), Expect = 3e-13 Identities = 90/114 (79%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 9920 GTTGTC-GTCGGC--ATTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAA 9976 |||||| |||||| | |||||||||| | ||||||||||| ||| || |||||| Sbjct 49403098 GTTGTCCGTCGGCGCAGACATGACGCCCATCCTCTGGTACTCCCCTACGCGCTTCTCGAA 49403039 Query 9977 GAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 |||||||| ||| || || ||||| ||| |||||||||||||| || ||||| Sbjct 49403038 GAAGTTGGTCTTTCCTTCCAGGGAGATGTTTTCCATGAAGTCAAAAGGATTCTC 49402985 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| |||||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 49400326 ACCTCCTCCGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 49400267 Query 10800 TACCGGATGGGGAA 10813 ||| ||||||||| Sbjct 49400266 TACTCGATGGGGAA 49400253 >seq6 Length=40768737 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 10261 CCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGC 10320 |||||||||||||||||| ||||||||| || ||| ||||||||||||||||| || Sbjct 2466951 CCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTCAGCCCGGGCATGAGCCCCCGCTTCT 2467010 Query 10321 GCAGCCAGAAAATGG 10335 ||||||||| |||| Sbjct 2467011 TCAGCCAGAAGATGG 2467025 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| ||| |||||||||||| || || |||||||||||||| ||| ||||| Sbjct 2465968 CATGACCCCCATCTTCTGGTACTCTCCCACGCGCTTCTCGAAGAAGTTGGTCTTCCCCTC 2466027 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| || |||||||| Sbjct 2466028 TAGAGAGATGTTCTCCATGAAGTCGAACGGGTTCTC 2466063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921600211940720