Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 125 1e-23 seq6 120 6e-22 seq11 84.2 4e-11 seq1 84.2 4e-11 >seq3 Length=56798892 Score = 125 bits (138), Expect = 1e-23 Identities = 98/117 (84%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| ||||||||||||||||| | ||||||||| |||| |||||||| || Sbjct 12783608 CTTCATGAAGAGATCGGGGATCCAGAGGGCATAGAAGAGGTCTCTGGCTCTCTGCTCCTC 12783667 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTC 245124 |||||||||||| ||||||| | ||| ||||| ||||| | |||||||||||| Sbjct 12783668 TTTCCCAGTGTTCTTCTTCAGCTCTAGAAACTCAAAAACGTCAAAGTGCCAGGGCTC 12783724 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 244096 CACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGAT 244155 ||||||||||||||| || ||||| | |||| |||| ||||||| || ||||| || Sbjct 12781197 CACCTGAAACTCTCCAGAGAGCACCCTGCGCGTATAGATGTTGCTGGTGTAAGGCTCAAT 12781256 Query 244156 GCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAG 244215 | ||| |||||||||||||||| || ||| ||||| ||||| || |||| ||| | Sbjct 12781257 GGACTCATTGTTGCCCAGTATCTGAGCTGTGGAGGCAGTAGGCATAGGGGACAGCAGTAA 12781316 Query 244216 ACTGTTCCTCACGCCGTGCCT 244236 |||||| | || |||| ||| Sbjct 12781317 ACTGTTACGGACTCCGTACCT 12781337 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | ||||||||| || | ||| ||||| || || |||||||||||||| Sbjct 12782452 CACCTCGTCTTTGCTGGTGTACTCCACCACCTCTGTGCACAGATTGCTGCACTTGATGGT 12782511 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||||||| ||| || ||| ||| |||||| || || ||||| | |||| |||| Sbjct 12782512 ACCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCACGCATCTTTGTAAACCATGTAGGGGGT 12782571 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 |||||||| ||| | ||| || ||| || ||| || | | ||||| ||| | Sbjct 12782572 TCCGGTCTCCGTCTGAGACTCGATGATCGC-GTACCACAGTTGCTGTGCCTTCACCACCT 12782630 Query 244884 TGCGAGCCTTGCCCTC 244899 |||| ||| ||||| Sbjct 12782631 TGCGCGCCCGTCCCTC 12782646 >seq6 Length=40768737 Score = 120 bits (132), Expect = 6e-22 Identities = 162/224 (72%), Gaps = 9/224 (4%) Strand=Plus/Minus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||||||||| | ||||| |||||||| ||||| ||||||| ||||||||||| Sbjct 2466462 AGGGGCTGCACTGTGACTTCGCCTGCCTGATGTTCC---GCCACCTGGTGCACAAGCCCT 2466406 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 || ||| ||| || | | || |||| ||||||| |||||| |||||||||| | Sbjct 2466405 CGGAGGCGCGCGTGAAGCAGGTGGTCGCGGACGCCGTGGCCATCGAGCAGGAGTTCCTGA 2466346 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG---TACA 43005 ||||| |||||||||| ||| ||||||||||| || || ||| ||| |||| Sbjct 2466345 CGCAGGCGCTGCCCGTCAACCTCATCGGCATGAACTGCGCGCTGATG---AAGCGCTACA 2466289 Query 43006 TCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGC 43049 || ||| ||| || |||| || ||| || |||| ||||| Sbjct 2466288 TCGAGTTCGTGGCAGACCGACTGCTGCTGGAGCTGGGCTTCAGC 2466245 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| |||||||||||||| | ||||| ||||||||||| ||||||||||| Sbjct 2466058 CCCGTTCGACTTCATGGAGAACATCTCTCTAGAGGGGAAGACCAACTTCTTCGAGAAGCG 2465999 Query 43130 CGTCGCCGACTACCAG 43145 ||| | || |||||| Sbjct 2465998 CGTGGGAGAGTACCAG 2465983 >seq11 Length=41528230 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 42486 GAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 ||||||||| | ||||| || || || ||||| |||||||| ||| ||||||||| Sbjct 33621756 GAGGTGCAGGTCCCCGAGGCCCGATGTTTTTACGGTTTCCAGATCCTCATCGAGAACGTG 33621697 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGA 42589 ||||||||| |||||| || || | ||||| ||||||| ||| Sbjct 33621696 CACTCTGAGATGTACGGCATGCTCATTAACACCTACATCCGGGA 33621653 >seq1 Length=69065196 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || |||||| | || || || || ||||| ||||| || | || || ||||| |||||| Sbjct 49401820 GTGGCCTTTGCTGCAGTAGAAGGTATCTTTTTCTCTGGGTCATTTGCTTCCATATTCTGG 49401879 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 || ||| ||| ||| | |||||| || ||||||||||| ||||| | || ||||| || Sbjct 49401880 CTGAAGAAGAGAGGCCT-GATGCCAGGCCTCACCTTCTCAAACGAGTTGATTAGCAGAGA 49401938 Query 42827 CGAGG 42831 |||| Sbjct 49401939 TGAGG 49401943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944316465033760