Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq20 96.9 4e-15 seq6 95.1 1e-14 seq132 91.5 2e-13 seq17 91.5 2e-13 seq14 91.5 2e-13 seq71 89.7 6e-13 seq8 89.7 6e-13 seq1 89.7 6e-13 seq27 86.0 7e-12 seq9 82.4 8e-11 >seq20 Length=14739584 Score = 96.9 bits (106), Expect = 4e-15 Identities = 84/103 (82%), Gaps = 6/103 (6%) Strand=Plus/Minus Query 56980 AACAAATTAACGTTTATGAAAAATTTT----CTCCTCGGCAAGAAATCGAACCCTGGTCT 57035 || |||| || ||| |||||||||| |||| || | | |||||||||| ||||| Sbjct 645982 AAAAAATGAA--TTTGAGAAAAATTTTGCACCTCCCCGTCGGGGAATCGAACCCCGGTCT 645925 Query 57036 CCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||| |||||||||||||||||| |||||| Sbjct 645924 CCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 645882 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 622561 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 622502 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 622501 TACTAACGAGGA 622490 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| |||||||||||||| |||||| ||||| |||| Sbjct 11403239 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGATAGGCGGGGATACTTACCA 11403298 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 11403299 CTATACTAACGAGGA 11403313 >seq6 Length=40768737 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2283085 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2283026 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 2283025 TACTAACGAGGATTG 2283011 >seq132 Length=109186 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 69156 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 69215 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 69216 ATACTAACGAGGA 69228 >seq17 Length=32595267 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 29087521 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 29087462 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 29087461 ATACTAACGAGGA 29087449 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3154984 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3155043 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 3155044 TACTATCGAGGAT 3155056 >seq14 Length=32369425 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 11916538 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 11916479 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 11916478 CTATACTAACGAGGA 11916464 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 11631434 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11631375 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 11631374 TACTAACGAGGA 11631363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 18685026 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACT 18685085 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 18685086 ATACTAACGAGGAGTG 18685101 >seq71 Length=267052 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 66033 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 65974 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 65973 TACTAACGAGGA 65962 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 108139 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 108198 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 108199 TACTAACGAGGA 108210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 196235 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 196294 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 196295 ATACTAACGAGGA 196307 >seq8 Length=50348508 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 7734312 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 7734253 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 7734252 TACTAACGAGGA 7734241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 70/84 (83%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||||| |||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 7734931 AAAAATTTCAGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 7734990 Query 57055 TACTCACCACTATACTACCGAGGA 57078 |||| |||||||||||| |||||| Sbjct 7734991 TACTTACCACTATACTAACGAGGA 7735014 >seq1 Length=69065196 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 639721 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 639662 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 639661 TACTAACGAGGA 639650 >seq27 Length=15260519 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 ||||||| | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 10160214 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTGCCACTA 10160273 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 10160274 TACTAACGAGGA 10160285 >seq9 Length=53241385 Score = 82.4 bits (90), Expect = 8e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 |||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct 38869849 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTGCCACTATACTAACGAGGAA 38869790 Query 57080 TGAATATATA 57089 ||||||| Sbjct 38869789 GACATATATA 38869780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543199722151840