Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq10 120 4e-22 seq21 86.0 9e-12 >seq10 Length=42345482 Score = 120 bits (132), Expect = 4e-22 Identities = 192/276 (70%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 8900 CCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCT 8959 ||||| |||||| ||| | || | || | | || || ||||| ||||| || || Sbjct 484193 CCCTTGACATTGCGACATACAAGAGTTTGTAGTGAGGCAGTATTCACAATGTCAAACCCA 484252 Query 8960 ACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATG 9019 || | || ||||||||||| ||||||||||| | ||||||||||| || |||| Sbjct 484253 ACTTTTCCACCGAAGGTGCTTGGTTTCCAGTATTCTGGGGAGCAGATTGGATTACCCATC 484312 Query 9020 AGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCG 9079 || || |||| ||| | |||||||||| || | ||| |||| || || |||||| Sbjct 484313 AGGCCCTTCAGAGAATATGGAGCCCCCATTTCCACCATGGTCTCCCCAAAAATGGCATTA 484372 Query 9080 GGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAG 9139 || | || || || | | || |||| || || || | || || | ||| |||||| Sbjct 484373 GGCCTAGGCTTCTCAATCAGCAAACCAGGATACAGCTCCATGGCATCAATGTCTCCATAG 484432 Query 9140 AGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||| | ||||| || || |||||||| ||| Sbjct 484433 AGCTCTTCTAGTTCGGCCGCCATTTCCTTCTCTCCT 484468 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 9738 GGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGAC 9797 |||||| || | |||| || |||| || ||||| || ||| | || ||||| || || Sbjct 486095 GGTTTGGAAGATGCGCTCATCGTCCCACTCTGGGTGCTCCTGTCTCAGGACATCACACAC 486154 Query 9798 CCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAA 9857 | ||| |||||||||||||| || ||||| |||||||| | || ||||| | ||||| Sbjct 486155 TCGGTTATGTTCTCTCAGCCAGATAGTGGCATACATCATGAGCCCTGGCACAAGGCCAAA 486214 Query 9858 CACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATG 9917 | || | ||||||||| || | | || |||||||| | || | || |||| | Sbjct 486215 GGCGTCGTGCCCCACTGCGAATCTGTGCTCTTCGGGCACATGAGGAGGGTAGTGCATGTC 486274 Query 9918 CACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 ||||||| || || || || || |||||||| || || || | ||| Sbjct 486275 CACCTGGACGTCCTTCACCAAAGGAGGGTACATTTCGCCATCGATCATCTG 486325 Score = 102 bits (112), Expect = 1e-16 Identities = 125/168 (74%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | ||||||| |||| || || ||||||||||| || || ||||||||| Sbjct 485721 TCAGGCATGAGTGGATGCCAGTGGTACAGAGTGTTGAACTCGGCTGCAATACGGTTCTGG 485780 Query 9613 TACTGAAAGGCGGT-ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 |||||||| ||| | ||| || | ||| |||||||| | |||| |||||||| || Sbjct 485781 TACTGAAA-GCGTTGGTTGAAAAGCAGCTCGGGGTCAAACTTCAGCTTAAAGTGGTATCC 485839 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 || || ||||| || || | | || | ||| || ||||| || || Sbjct 485840 ACTCAGGTGCTGCACGTAATCTTCAATCACAATTTTTATGGTCTCACC 485887 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/175 (71%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 10123 TTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAAAA 10182 ||||||||||||||| ||| | |||||||| | |||| | || ||| | || | Sbjct 486971 TTACCCCATGCCCCAGGCCTCTTGTGAAAGCTGCTCCTTTTTTAAAGTCTGTCTTGAAGA 487030 Query 10183 ATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATCGG 10242 | ||||| || ||||| || |||| || || ||||||||| |||| || || || || | Sbjct 487031 ACTGGTGGGTGAAGTGCTGAGCGAAGAAGGCAAACATCAGGCTGGTTCCTTGCGGGTCTG 487090 Query 10243 GGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGA-ATCGGGCA 10296 ||| ||| |||| | | || | || ||||| ||| || |||| ||| |||| Sbjct 487091 GGACAAATCTCCTTCTCAAAAGGAACTTCTCCACTATCAGT-TTGACATCAGGCA 487144 >seq21 Length=15143781 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 9724 ATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTG 9783 ||||| ||||||| || || || | ||||||||| | ||| ||||| || | || Sbjct 4328233 ATGATGAGACGAGCCGTCTGGAATAGCTGCTCGTCGCTCCAGGTGGGGTGCTCCTTCTTC 4328174 Query 9784 AGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCA 9835 |||| || || |||| |||||| || |||||||| |||||||||||||||| Sbjct 4328173 AGAATGTCACACACCCGGTTGTGCTCCCTCAGCCAGATGGTGGCGTACATCA 4328122 Score = 86.0 bits (94), Expect = 9e-12 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 ||||| || |||| ||||| |||||| | || | | |||||||| | || |||| Sbjct 4329595 GAAAACTGTCTGGCATCAGAGGGTGCCAGTGATACAAGTGGTTGAACTCCACAGCAATTC 4329536 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 ||| |||||| || ||| ||||| | ||| |||||||| | |||| |||| Sbjct 4329535 TGTTTCTGTACTGGAACTGATCACCAAACAGGAGCTCGGGGTCAAACTTCAGCTTCAAGT 4329476 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||| || || || ||||||||||||| | || | || |||||||| ||||| Sbjct 4329475 GGTAGCCACTCAGGTGCTGGACATACTCTTCAATCACGATCTTAATGGTCTCCCC 4329421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723710576248400