Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq10 102 1e-16 seq3 102 1e-16 >seq10 Length=42345482 Score = 102 bits (112), Expect = 1e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 200191 AGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAATATCACGAAGT 200250 ||| |||||| | || |||||||| ||||| |||||||| |||||||||||| |||| || Sbjct 13051934 AGAGTGGTTCAGAAGCACATGGACACTGCAAGATGACCCCTGTAAAAAATATTACGAGGT 13051993 Query 200251 GCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 ||||| | || ||| || |||| || ||||||||||||| Sbjct 13051994 CCTCATGGTTAATCCCATTTTATTGGTACCTCCAACCAAGG 13052034 >seq3 Length=56798892 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | |||||| | |||||| | |||||| || || |||| Sbjct 12780635 CCTGCTTCCAGCCATAGAAGTGCATACTGGTCAGTTTCCCATAGTTGGGCTCTGCGATGT 12780694 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | |||||||| |||||||| ||||| ||||| | | | || || || ||||| ||||| | Sbjct 12780695 GGATGTTCAGCGACTGGCTCTGGTCAATGAAGGCCCCTCGGTCAGCAGCCATCTTGATCA 12780754 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA 204065 || || || || ||||||||||| |||||| ||| Sbjct 12780755 CAGTTTTTTGGGAGATCTCCCACACAGTCTTGTACA 12780790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795136056638560