Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq18 264 1e-65 seq21 82.4 1e-10 >seq18 Length=15682605 Score = 264 bits (292), Expect = 1e-65 Identities = 810/1241 (65%), Gaps = 20/1241 (2%) Strand=Plus/Plus Query 6579 CTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCT 6638 |||| || | || || || || |||||||| ||||| || ||||| | | |||| Sbjct 6255017 CTTTGTATCTCTCGGCGTCCTGCACCATCTTCTCAATTTCCTCTTTGCTCAGCCGGCCCT 6255076 Query 6639 TATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACAT 6698 | ||||| || || || ||||| | ||| || | | || || | ||| || | Sbjct 6255077 TGTCATTGGTGATGGTGATCTTGTTCTCTTTGCCAGTGCTTTTGTCCACTGCAGACACGT 6255136 Query 6699 TCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCG--G 6756 ||| ||| ||||| || |||| || || | || | || ||||| |||||||| | Sbjct 6255137 TCAGAATGCCATTGGCGTCAATGTCAAAGGTCACCTCGATCTGTGGC--ACCCCTCGTGG 6255194 Query 6757 TGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTT 6816 || | || |||||||| | ||||| | || || | |||| ||| | | | | Sbjct 6255195 GGCAGGGGGGATACCCGTCAGCTCAAACTTGCCCAGAAGGTTGTTGTCCTTGGTCATGGC 6255254 Query 6817 ACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAA 6876 | ||| |||||||| || | || || |||| || || ||| || | ||| Sbjct 6255255 TCTTTCCCCTTCATACACCTGGATCAGGACACCAGGCTGGTTGTCTGCATAAGTAGTGAA 6255314 Query 6877 GATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACC 6936 | | || || ||| | ||||| || || || | | ||| | | ||||| | || Sbjct 6255315 GGTCTGGGTTTGCTTGGTGGGAATGGTAGTGTTGCGCTTAATGAGGGCTGTCATGACTCC 6255374 Query 6937 ACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAAC 6996 || ||| |||| || | ||||| || | |||||||| || | | |||||| || Sbjct 6255375 TCCTGCAGTCTCGATGCCCAACGACAGTGGAGCCACGTCCAGCAGCAGTAAGTCTTGCAC 6255434 Query 6997 AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGC 7056 | || || ||| | | |||||| || || || | || || || || || || Sbjct 6255435 ATTCTCAGAGGTGTCGCCCATGAGGATGGCTGCCTGCACAGCTGCACCATAGGCCACAGC 6255494 Query 7057 CTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTG 7116 |||||||||||| || | || ||||| || | || || || | ||| | || || Sbjct 6255495 CTCATCGGGGTTGATGCTCTTGTTCAGCTCCCTGCCATTGAAGAAGTCCTGCAGCAGTTT 6255554 Query 7117 TTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTT 7176 || || | ||||| || || || || || || | ||||| |||| | || || || Sbjct 6255555 CTGGATCCTGGGGATGCGAGTGGAGCCTCCAACAAGGACGATGTCATGAATTTGAGACTT 6255614 Query 7177 ATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAA 7233 || ||||| | |||| |||| || || || || |||| | | | | ||| | Sbjct 6255615 GTCCATCTTGGCATCTCTGAGTGCCTTCTCAACCGGCTCCAAGGTCCCTCT---GAAGAG 6255671 Query 7234 GTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTC 7293 ||| || ||||||||||| || | |||||| || || ||||| || | ||| || Sbjct 6255672 GTCAGAGTTCATCTCCTCAAAACGAGCCCTGGTAATAGAGGTGTAGAAGTCGATGCCTTC 6255731 Query 7294 GTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCG 7353 || | || || ||||| ||| | | || | | || || | |||| ||| || | Sbjct 6255732 ATACAGAGAGTCGATTTCGATGCTGGCCTGAGAGCTGGAGGACAGGGTTCTCTTGGCTCT 6255791 Query 7354 CTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATG 7413 |||||| || || || | | | || || | | | | || || ||||| | Sbjct 6255792 CTCACATGCGGTGCGCAGTCTCCTCAGTGCTCTTTTGCTCTGGCTGATGTCCTTCTTGTA 6255851 Query 7414 TTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACC 7470 ||| | || |||||||| ||||| | || | | | | || || || || || Sbjct 6255852 TTTCCTCTTGAACTCTTCCACAAAGTGGTTGACCATGCGGTTG---TCAAAGTCCTCCCC 6255908 Query 7471 ACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAA 7530 ||||| |||||| ||||| || || || ||||| |||||||| || | || ||| | | Sbjct 6255909 ACCCAGGTGTGTGTCCCCTGCTGTGGCCTTGACCTCAAAGATCCCATCCTCGATGGTAAG 6255968 Query 7531 CAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC 7590 | || || ||||| || || |||||||||||||| || | ||||| || || || Sbjct 6255969 GATGGACACGTCAAAGGTGCCGCCACCCAGGTCAAAGATCAAGACGTTGCGCTC-TCCTC 6256027 Query 7591 T-TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA 7649 | ||| |||||| || ||||| ||||| || || || || || ||||| || || | | Sbjct 6256028 TCTTGCCCTTATCCAGCCCGTAAGCGATGGCAGCTGCTGTGGGCTCATTGATGATTCTCA 6256087 Query 7650 G-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTA 7708 | ||| ||||| ||||||||| | || ||||| ||||| || || || || || || Sbjct 6256088 GCACA-TTCAGTCCAGCAATAACGCCGGCGTCTTTGGTCGCCTGGCGCTGGGAGTCATTG 6256146 Query 7709 AAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCG 7768 |||||||| || || || | ||| || | | |||||||| || || |||| || || Sbjct 6256147 AAGTAGGCAGGAACGGTGATGACGGCATTGGAGACTTTCTGTCCCAGGTACGCCTCGGCA 6256206 Query 7769 ATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || ||||| || || || ||||| || || |||||||| Sbjct 6256207 ATCTCCTTCATCTTAGTCAGGACCATAGAGGAGATCTCTTC 6256247 Score = 219 bits (242), Expect = 5e-52 Identities = 436/635 (69%), Gaps = 12/635 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || ||||||| ||| || ||||| || || || ||||| |||||||| || Sbjct 6275983 TCAAAGTCCTCCCCACCCAGGTGCGTGTCCCCTGCCGTGGCCTTGACCTCAAAGATCCCG 6276042 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | || || ||||| || || |||||||||||||| || | ||| Sbjct 6276043 TCCTCGATGGTAAGGATGGACACGTCAAAGGTGCCGCCACCCAGGTCAAAGATCAAGACG 6276102 Query 7577 TTCGTATCGTCGTCT-TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || || || ||| ||| |||||| || ||||| ||||| ||||| || || || || Sbjct 6276103 TTGCGCTC-TCCTCTCTTGCCCTTATCCAGCCCGTAAGCGATGGCCGCTGCTGTGGGCTC 6276161 Query 7636 ATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 ||| || || | || ||| ||||| ||||||||| | || ||||| ||||| || | Sbjct 6276162 ATTGATGATTCTCAGCACA-TTCAGTCCAGCAATAACGCCGGCGTCTTTGGTCGCCTGGC 6276220 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || || || |||||||| || || || | ||| || | | |||||||| || | Sbjct 6276221 GCTGAGAGTCATTGAAGTAGGCAGGAACGGTGATGACGGCATTGGAGACTTTCTGTCCCA 6276280 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 | |||| || || || || ||||| || || || ||||| || || |||||||| | | Sbjct 6276281 GGTACGCCTCTGCAATCTCCTTCATCTTAGTCAGGACCATAGAGGAGATCTCTTCTG-GG 6276339 Query 7815 CAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 | | || || | || || || | || || | | | |||| || | || ||| Sbjct 6276340 TAGAAGGTCTTATTCTCTCCTTTGTACTCCACCTGCACCTTGGGCTTGCCTCCATCAC-- 6276397 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 ||| ||||| | | ||| | ||||||||| || || |||| |||| Sbjct 6276398 -TGATCACCTTGAAGGGCCAGTGCTTCATATCGGACTGCACAACAGGGTCTTCGTACTTC 6276456 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 || || || || ||||| |||||||| | ||||| |||||||||||||| |||||| Sbjct 6276457 CTGCCAATCAGCCGCTTCGCATCAAAGATGGTGTTATTGGGGTTCATGGCCACCTGGTTC 6276516 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || || || ||||| || | || | | || || || || || || ||||| Sbjct 6276517 TTGGCTGCATCTCCGATGAGCC--TC-TCCGTGTCAGTGAAGGCCACATAGCTCGGGGTG 6276573 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 || | || || |||||||| || || || || || Sbjct 6276574 GTCCTGTTGCCCTGGTCGTTGGCGATGATCTCCAC 6276608 >seq21 Length=15143781 Score = 82.4 bits (90), Expect = 1e-10 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || |||||||| ||||| || || ||||| | |||||| || |||||||| Sbjct 12098843 CCAATCAGACGCTTGGCATCGAAGACCGTGTTCTCGGGGTTGGAGGTCAGCTGGTTCTTG 12098784 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||||||||| || || || | | || || || ||||| || || || | Sbjct 12098783 GCGGCGTCCCCGATCAGGCGCTCCCCCTCGGCGGTGAAGGCCACGTAGGAGGGCGTGATG 12098724 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGC 8114 || || || |||||||| || || || || |||||| | || | ||||||| |||| Sbjct 12098723 CGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGCCATTCTTGAAGACGCCAACGC 12098666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635117509177840