Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 98.7 1e-15 seq11 93.3 5e-14 seq1 84.2 3e-11 >seq3 Length=56798892 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106505 GTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 106564 |||||||| | | ||||| |||| ||| | ||| || || |||| |||| ||| Sbjct 12782468 GTGTACTCCACCACCTCTGTGCACAGATTGCTGCACTTGATGGTACCCAGGTTCTGCTGG 12782527 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 || ||||| ||||||||||||| ||||| | ||||||||| || || ||||||||||| Sbjct 12782528 TTGCTCTTCCTGTTGCACGCATCTTTGTAAACCATGTAGGGGGTTCCGGTCTCCGTCTGA 12782587 Query 106625 GACTTGAGAATTGCCTTCCACA 106646 |||| || || || | ||||| Sbjct 12782588 GACTCGATGATCGCGTACCACA 12782609 >seq11 Length=41528230 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352 ||||||||| | ||||| ||||| || || || |||||||||||||||| ||||| Sbjct 33620174 CCTCATCTCTGCTGATAAGCTCATTGGAATAGGTCAGTCCTGGCATGAGACCCCTCTTCT 33620233 Query 117353 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 117401 ||| ||| |||||||| ||| || |||||||| |||||||| || || Sbjct 33620234 TCAGCCAGTAAATAGCAGCGAAAGAGCCGGAGAAAAAGATACCTTCTAC 33620282 >seq1 Length=69065196 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || ||||| || |||||||| |||||||||||||| || || ||| ||||||||||| Sbjct 49403061 TACTCCCCTACGCGCTTCTCGAAGAAGTTGGTCTTTCCTTCCAGGGAGATGTTTTCCATG 49403002 Query 117046 AAGTCAAATGGATTCT 117061 |||||||| ||||||| Sbjct 49403001 AAGTCAAAAGGATTCT 49402986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589966596212240