Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-19 seq11 84.2 2e-11 >seq1 Length=69065196 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || ||||| || || || || || | || |||||||| ||||| || | Sbjct 49401943 CCTCATCTCTGCTAATCAACTCGTTTGAGAAGGTGAGGCCTGGCATCAGGCCTCTCTTCT 49401884 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| ||||||||||| ||||| || || |||||||||||||| ||||| | Sbjct 49401883 TCAGCCAGAATATGGAAGCAAATGACCCAGAGAAAAAGATACCTTCTACTGCAGCAAAGG 49401824 Query 19103 CAAC 19106 | || Sbjct 49401823 CCAC 49401820 >seq11 Length=41528230 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | ||||| ||| | || | || ||||| || || || || | Sbjct 33620174 CCTCATCTCTGCTGATAAGCTCATTGGAATAGGTCAGTCCTGGCATGAGACCCCTCTTCT 33620233 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||| | |||| ||| || || || || || || |||||||||||||| ||||| | Sbjct 33620234 TCAGCCAGTAAATAGCAGCGAAAGAGCCGGAGAAAAAGATACCTTCTACTGCAGCAAAGG 33620293 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| ||||| Sbjct 33620294 CCACAATTCTCTCTCC 33620309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562095267230640