Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq26 100 2e-15 seq18 86.0 5e-11 >seq26 Length=13772684 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| ||||| || || || ||||| || || || ||||| ||||||| Sbjct 9355726 ATGCTGTTGTCACTGTGCCAGCGTACTTCAACGACTCTCAGCGCCAGGCTACAAAAGATG 9355667 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| |||||||| || || || || ||||| || ||||||||||| Sbjct 9355666 CTGGCACCATTTCTGGGCTTAATGTGCTCCGGATCATTAATGAGCCAACTGCTGCTGCTA 9355607 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 9355606 TTGCCTATGG-CTTG 9355593 >seq18 Length=15682605 Score = 86.0 bits (94), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 |||||| | || || |||||||| | | || ||||| | | ||| || | | Sbjct 6256250 CCAGAAGAGATCTCCTCTATGGTCCTGACTAAGATGAAGGAGATTGCCGAGGCGTACCTG 6256191 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || || |||| | |||| || || || || || || || || |||||||| || || Sbjct 6256190 GGACAGAAAGTCTCCAATGCCGTCATCACCGTTCCTGCCTACTTCAATGACTCCCAGCGC 6256131 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 || || || ||||| || || |||||||||||| ||||| || | || |||||||| Sbjct 6256130 CAGGCGACCAAAGACGCCGGCGTTATTGCTGGACTGAATGTGCTGAGAATCATCAATGAG 6256071 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || || ||||| | || || || || ||||| Sbjct 6256070 CCCACAGCAGCTGCCATCGCTTACGGGCTGGATAA 6256036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029194144433740