Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq9 138 9e-28 seq2 96.9 3e-15 >seq9 Length=53241385 Score = 138 bits (152), Expect = 9e-28 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| ||||| ||||| |||||||| ||||| || | |||||||| ||||| || || Sbjct 31664034 AGCCCAGTGACATGAGCGATCATGTATGTGAGCAGCGCATAGCTGGCAATGTTGAATGGC 31663975 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || ||||||||||| || || | ||| |||||||| || || | || || | | | Sbjct 31663974 ACACCCAGCCCCATGTCTCCTGAGCGCTGATAGAGCTGGCAGGACAATTCACCATTGGAC 31663915 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||||||||||| |||| || ||| || |||||||||||||| Sbjct 31663914 ACGTAAAACTGGCACAGGGCGTGACAGGGAGGAAGAGCCAT 31663874 Score = 127 bits (140), Expect = 2e-24 Identities = 129/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| |||||||| || ||||||||||| || || ||||| || || ||||| Sbjct 31662005 CATGTCTTTGTATTCTGCTCCAAAGTGCCTCCACTGAAAACCATACACTGGCCCTAGGTC 31661946 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || || ||| ||||| |||||||| ||||| || | ||| || || || || Sbjct 31661945 ACCTTCCTCTCTGGAGGTAAAGCCACTCTTGTCTAAAAACTCCCGGGATCCATTTGCATC 31661886 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || |||||| ||| ||||| ||||||||||| || || Sbjct 31661885 CCAGATTTTGACTCCCTTCATGGACAGCTCCTTGGAGTTTGTAGAGCC 31661838 >seq2 Length=68575853 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 ||||||||||||||||| || | ||| || |||| | | || ||||||||| | || || Sbjct 13542890 TTAAGCTCCCTGCTGAGCACAATGTTGATTCTGTTTTTGAGGGGTCTATTCCTCTCTGGA 13542949 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCT 112204 ||||||||||| ||||| || ||||| ||||| | ||||||| Sbjct 13542950 ATGGAGAACCAGGTCTTCCTTCCCATGATCACTGCATTCTGCT 13542992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608008467998