Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6 192 1e-43 seq19 129 1e-24 seq2 118 2e-21 seq3 95.1 2e-14 seq14 84.2 4e-11 seq11 84.2 4e-11 >seq6 Length=40768737 Score = 192 bits (212), Expect = 1e-43 Identities = 186/239 (78%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 241389 GCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCC 241448 |||||||||| || | ||| || || | ||| ||||| || |||||||| |||| Sbjct 16109004 GCTGACAGCCGCTGCTAACGTGGGTCATAACTTTCTGCTTGAGCTGCGCCACCTGCTCCC 16109063 Query 241449 GCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCT 241508 |||| | ||||| || |||||||| || || ||||| || ||||| | || || |||| Sbjct 16109064 GCAGCAAAGACGCCGTGTTGGACAGGCCGGCATTGTCCGATTTGAGGATTTTGACCTTCT 16109123 Query 241509 CCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGT 241568 ||||||| || |||||||| ||||| || |||||||||||||| ||||| |||| |||| Sbjct 16109124 CCTCCAGGCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCATTTCGTGGCCGCCAGCCGGT 16109183 Query 241569 TCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||| || ||||| || || |||||||| | ||||||| |||||||||||| || ||| Sbjct 16109184 TCCTCAGCCTCTTCCGCTCGGCCTTGATCCTCTCCTGGTTCTCCATGTCGATGGGGGAC 16109242 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| ||||| || |||||| | |||||||| | ||||| || |||||||| || || | Sbjct 16109037 TCTGCTTGAGCTGCGCCACCTGCTCCCGCAGCAAAGACGCCGTGTTGGACAGGCCGGCAT 16109096 Query 238986 TATCAGACTTGAGCATT--------CTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || || ||||| ||| ||||||||| || |||||||| |||||||| Sbjct 16109097 TGTCCGATTTGAGGATTTTGACCTTCTCCTCCAGGCGGGCGATGCGCTCCAGCTT 16109151 >seq19 Length=9910484 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 |||||||| ||||||||| ||||| ||||| |||| ||| | | || || || || Sbjct 3760382 CAGGACCTTCTGTTTGAGCTGGGCGACCTGCTCCCTCAGCAGGCTGGCCGTGGAGGCAAG 3760441 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 | | | ||| | | ||| || ||||||||| ||||||||||||| || | ||||| Sbjct 3760442 TTCAGTGTTTTGATTCTTCAGGGACTTCACTTTGTCCTCCAGCCGCGAAATCCTCTCCAG 3760501 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 ||| ||| ||||| |||| || || | |||||| || || |||| | |||||||| Sbjct 3760502 TTTCCGCTTTCGGCACTTGGACGCGGCGATGCGGTTGCGCAGCTTCTTCCTCTCCGCCTT 3760561 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||| ||||| ||||||||||| || ||| Sbjct 3760562 GATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 3760595 >seq2 Length=68575853 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 241424 TGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTG 241483 || ||||| ||||||||||| |||||||||| || || || ||| | | || Sbjct 7962678 TGCTTGAGCTGGGCCACCTGCTCCCGCAGAATACTGGCAGTGGAGGCCAGGTCCGAATTC 7962737 Query 241484 TCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGG 241543 | | ||| ||||||||||| ||||||||||| || | ||| || ||||| || | | | Sbjct 7962738 TGGGTCTTCAGCACCTTCACCTTCTCCTCCAGGCGGGAGATCCGCTCCAGCTTCCTCTTG 7962797 Query 241544 CGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCC 241603 ||||| |||| || || | ||||||| || ||||| || ||||||||||| | ||| Sbjct 7962798 CGGCACTTGGAAGCGGCGATCCGGTTCCTCAGCCTCTTGCGCTCCGCCTTGATCCTCTCC 7962857 Query 241604 TGGTCCTCCATGTCGATCGGAGA 241626 || ||||| ||| || ||||| Sbjct 7962858 TGTGTCTCCAGGTCAATGGGAGA 7962880 >seq3 Length=56798892 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| | ||| |||||||| |||||||| |||||| ||||||||||| ||| Sbjct 12782468 GTGTACTCCACCACCTCTGTGCACAGATTGCTGCACTTGATGGTACCCAGGTTCTGCTGG 12782527 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| | ||| ||||| | ||||||||||| |||||||| ||| Sbjct 12782528 TTGCTCTTCCTGTTGCACGCATCTTTGTAAACCATGTAGGGGGTTCCGGTCTCCGTCTGA 12782587 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACC 213689 ||| | | ||| | ||| || | | ||||| |||||| Sbjct 12782588 GACTCGATGATCGCGTACCACAGTTGCTGTGCCTTCACCACC 12782629 >seq14 Length=32369425 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 38871 GGTTTCGCGCTGCTGAATGCCACACCGGAGAATGCGTACCTGTCCAACACCAGGCTCGTC 38930 || || |||||| |||| ||||| |||||||| ||||| ||||||| |||||| ||| Sbjct 12107297 GGCTTGGCGCTGGTGAACGCCACTCCGGAGAAAGCGTATCTGTCCACCACCAGACTCACG 12107356 Query 38931 CCCCGTTCCAGCTTCTGCTTCATC 38954 ||| | |||||||||||| ||||| Sbjct 12107357 CCCTGCTCCAGCTTCTGCCTCATC 12107380 >seq11 Length=41528230 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || || | |||||| ||| | ||||| || || || ||||||| ||||||| || Sbjct 33620176 TCATCTCTGCTGATAAGCTCATTGGAATAGGTCAGTCCTGGCATGAGACCCCTCTTCTTC 33620235 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||| |||| || ||||||||||| ||||| ||||| || || ||||| || || || Sbjct 33620236 AGCCAGTAAATAGCAGCGAAAGAGCCGGAGAAAAAGATACCTTCTACTGCAGCAAAGGC 33620294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931510373347840