Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3 104 4e-17 seq11 93.3 8e-14 seq6 86.0 1e-11 >seq3 Length=56798892 Score = 104 bits (114), Expect = 4e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 222023 TTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTG 222082 |||| || || | || ||||||||| || |||||||| || || | ||||| |||||| Sbjct 12783594 TTGTTTTCAACACGCTTCATGAAGAGATCGGGGATCCAGAGGGCATAGAAGAGGTCTCTG 12783653 Query 222083 GTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCG 222142 | | ||||||||| || |||| ||| |||| || | ||||||||||| |||| | Sbjct 12783654 GCTCTCTGCTCCTCTTTCCCAGTGTTCTTCTTCAGCTCTAGAAACTCAAAAACGTCAAAG 12783713 Query 222143 TGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||| ||||| ||||| | ||| | || || |||| || Sbjct 12783714 TGCCAGGGCTCTAGATACATGGCAAATGCACCAGGTCTCT 12783753 >seq11 Length=41528230 Score = 93.3 bits (102), Expect = 8e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || ||||||||||| || || || ||||||||| ||| || || || || || | |||| Sbjct 33620297 GTGGCCTTTGCTGCAGTAGAAGGTATCTTTTTCTCCGGCTCTTTCGCTGCTATTTACTGG 33620238 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 || ||| ||| ||| |||||| || ||| || |||||| ||||| |||||||| || Sbjct 33620237 CTGAAGAAGAGGGGTCTCATGCCAGGACTGACCTATTCCAATGAGCTTATCAGCAGAGAT 33620178 Query 26005 GAGG 26008 |||| Sbjct 33620177 GAGG 33620174 >seq6 Length=40768737 Score = 86.0 bits (94), Expect = 1e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 25934 CCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCA 25993 ||||||||||||| ||| || |||| ||||||||||||| ||| ||||||||||||| Sbjct 2467025 CCATCTTCTGGCTGAAGAAGCGGGGGCTCATGCCCGGGCTGACCTTCTCCAACGAGCTCA 2466966 Query 25994 TCAGCAGGGACGAGG 26008 ||||| | ||||||| Sbjct 2466965 TCAGCCGCGACGAGG 2466951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928822438061440