Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq3 145 9e-30 seq1 87.8 2e-12 seq2 82.4 9e-11 >seq3 Length=56798892 Score = 145 bits (160), Expect = 9e-30 Identities = 542/834 (65%), Gaps = 23/834 (3%) Strand=Plus/Plus Query 160137 ATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAA 160196 |||||||| | ||| || || || | || ||||| || | ||| || || | || Sbjct 53636839 ATCCAGTGGAGGTCCCCAGATCCATAGACACAGACCGATCTGCGGTGAACACCCGTACAG 53636898 Query 160197 GGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTG 160256 | || || || ||||||| | ||| ||||| | |||| ||| || || | | Sbjct 53636899 CGTGGATAGGAAGATCCTTTCTGAATGTCGCCTTCCAAATACTCCCATTTTACCAGTCGA 53636958 Query 160257 GCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACG 160316 || || || |||||||||||||| | |||| | | | |||| | || || || Sbjct 53636959 GCAATGGCAATCATGTCGGAGGTGTGGAATTTCTCGTTGATGGGATTCGACCCCGGCACC 53637018 Query 160317 CCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGAC 160376 || | ||| | ||| || || ||||| ||||| || || |||||||| |||||||| | Sbjct 53637019 CCAGACATCCTCTGCAGCGTTGCCCAAAGGTGCTCATCAGGGCTGTAGGTGTCCTTTTCC 53637078 Query 160377 CATTCCATGAACTCTCCGATTAACCTGTCCCGCAGA-ACGTGAGTAACGTAGGATCTGGT 160435 ||||| | | | | || | | || | || | ||||| | || | ||||| Sbjct 53637079 CATTCAA-GTAGTTTCTGTGTCTCCGGGTTTTCAAACACGTGTTTGACAAAATCCCTGGT 53637137 Query 160436 CACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG-TCTTTGT 160494 |||||||||||| ||| | |||||||| || || | || || || | | ||||| | Sbjct 53637138 CACGACAAAGTATGCGTTACCGGAGAACATGGGGGAGCCAATGGGAGGGGGGCTCTTTTT 53637197 Query 160495 CCTGACCGGTGTTAGACACCACTCCTTTCACC----AGCGCGTGTCGCTTCTTCCACCTG 160550 ||| | || | | ||| | | | | | | ||| | | | ||| | | Sbjct 53637198 -------GGTTTCAGTC-CTACTTATGTGATCCTTGACCTCGTAATGGTACAACCAGCGG 53637249 Query 160551 ACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTC 160610 | | || ||| || || || | || || ||||| |||| ||| | ||| Sbjct 53637250 TCTTTTTTATGCCTCGGGGTGGACTCTGATTCAAGGCTGTTCCTGCCGTTGAGGGCTTTG 53637309 Query 160611 AGCTGCTTG-ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTAT 160669 || || || ||||| || ||||| || || | ||||| ||||| ||||| ||| | Sbjct 53637310 AGG-GCATGCACGATTTCCAGGTTGGTTTTAATGGGAAAATCGGTGCCGCAGGTGTTGAG 53637368 Query 160670 CACGTACTTCCATTTCGC-GCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCT 160728 || ||| |||||| | | | || || ||| |||| |||||| || | ||||||| Sbjct 53637369 CAGATACCTCCATTGTACAGTTGAGTTCA-GCAAGTCCTCCATGCAGTTCAAGTCTGCCT 53637427 Query 160729 GCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTAT 160788 |||| | ||| | ||||| | || || || ||||| ||||||| ||| || || | Sbjct 53637428 GCACCCTTGACCAAGTGGCGTAGATGACCTTTTCCAGTTTTCTGGCCAAAAATACATT-T 53637486 Query 160789 CGAAA-CACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGG-TC 160846 |||| || ||| | || | || || |||| || | | |||| | || Sbjct 53637487 GGAAAGCAGGACGCAATGGCTTTTACAGCATTCTTGAAC-TCCTCTGAAGATTTCTGATC 53637545 Query 160847 CACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACAT 160906 |||||||||||| |||| |||||||| | ||| ||||| | || | |||||| ||| | Sbjct 53637546 CACGTGCACGCAGTACACATTCTGAGGGGTGTATATGGCGCGCAGAAGCCTCTCAAACGT 53637605 Query 160907 CTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 ||| || || | ||||||||| || |||||||| || || || || | ||||| Sbjct 53637606 CTCAATTTTTTCATGGATCACCATGGAGTAGGCAATGGGGAAGTCTTTTTCCTC 53637659 >seq1 Length=69065196 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 176263 AATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGTTTTCATAATTTTGTCTGGAGG 176322 |||||| ||||| ||||| || | | || |||||||| || || |||| ||| || | Sbjct 54609279 AATCATCTACATGAATAAAAGCATCTCCAGGGATGTAGTTCTCGTAGTTTTCTCTTGATG 54609220 Query 176323 GTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGCGGTAGATCTTTTCTGAGATGT 176382 |||| | || ||||| || |||| | ||| || ||| | ||||||| ||| | Sbjct 54609219 GTCCCAGGACAATTGGCACTGTACCGACCGATAGTGCATTGTACAATTTTTCTGTGATAT 54609160 Query 176383 AGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACTTACA 176425 |||| |||| |||||||||||||| | | ||| || ||||| Sbjct 54609159 AGTCTCTGTGGATTGAGTTTTCAAATGAAAGATAAAATTTACA 54609117 >seq2 Length=68575853 Score = 82.4 bits (90), Expect = 9e-11 Identities = 174/260 (67%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 160539 TTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCG 160598 |||||||| || | ||||| |||||||| ||| || ||||| || || || Sbjct 34661109 TTCTTCCATCTCATTTCCTTGTTGGGTGGCATCTTTTCTGTTTCTAGGCTATTCTTTCCA 34661050 Query 160599 TCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCG 160658 | | | ||||||| ||||| || ||||| || || | || || || | || Sbjct 34661049 TTCAAGGCTTTCAGCATTCCAACGATTTCCAGGTTGGTTTTTATAGGGAAATCCATGCCA 34660990 Query 160659 CACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTA 160718 || | || || | ||||||||| | | || | || |||||| ||||||| ||| Sbjct 34660989 CAGAGATTGATGAAGTACTTCCAGCTTGAACTGTGTCTGTACAGGTCTTTCATGCAGTTA 34660930 Query 160719 ATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACA 160778 ||||||||||| || | | |||| ||||| | || | |||| || |||||| ||| Sbjct 34660929 ATATCTGCCTGGACCCTACCCCAGCTTGCGTAGATGACACTTTCTAATTGACTGGCAACA 34660870 Query 160779 AAGACGTTATCGAAACACGA 160798 || || ||||| || || || Sbjct 34660869 AAAACATTATCAAAGCAAGA 34660850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577205303447760