Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 seq11 93.3 5e-14 seq1 84.2 3e-11 >seq3 Length=56798892 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || || || | || ||||||||||| ||||| || || ||| ||||||| ||| Sbjct 12782607 TGGTACGCGATCATCGAGTCTCAGACGGAGACCGGAACCCCCTACATGGTTTACAAAGAT 12782548 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| |||||| ||||| |||| |||| || |||||| || ||||| ||| Sbjct 12782547 GCGTGCAACAGGAAGAGCAACCAGCAGAACCTGGGTACCATCAAGTGCAGCAATCTGTGC 12782488 Query 75998 ACGGAAATTTTAGAGTACAC 76017 || || | | |||||||| Sbjct 12782487 ACAGAGGTGGTGGAGTACAC 12782468 >seq11 Length=41528230 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 65101 GTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGT 65160 || || |||||||| |||||||| || ||| |||||||| ||| |||||||| ||||| Sbjct 33620282 GTAGAAGGTATCTTTTTCTCCGGCTCTTTCGCTGCTATTTACTGGCTGAAGAAGAGGGGT 33620223 Query 65161 CTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGG 65209 ||||||||||| || || || ||||| ||||| | ||||||||| Sbjct 33620222 CTCATGCCAGGACTGACCTATTCCAATGAGCTTATCAGCAGAGATGAGG 33620174 >seq1 Length=69065196 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| |||||||| ||||||||||| ||| || || |||||||||||||| |||| Sbjct 49402986 AGAATCCTTTTGACTTCATGGAAAACATCTCCCTGGAAGGAAAGACCAACTTCTTCGAGA 49403045 Query 65501 AGCGAGTTGGGGACTA 65516 |||| || ||||| || Sbjct 49403046 AGCGCGTAGGGGAGTA 49403061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596555237586880