Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq18 374 1e-98 seq19 104 3e-17 >seq18 Length=15682605 Score = 374 bits (414), Expect = 1e-98 Identities = 836/1248 (67%), Gaps = 8/1248 (1%) Strand=Plus/Minus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 || ||||| || || |||||||| ||| |||||||||||||| ||| || | | | || Sbjct 6256250 CCAGAAGAGATCTCCTCTATGGTCCTGACTAAGATGAAGGAGATTGCCGAGGCGTACCTG 6256191 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || | | || |||| || | || || ||||| ||||||| ||| || || || Sbjct 6256190 GGACAGAAAGTCTCCAATGCCGTCATCACCGTTCCTGCCTACTTCAATGACTCCCAGCGC 6256131 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGA 195810 |||||||| || ||||| | | |||||| || || || ||| || ||||| |||||||| Sbjct 6256130 CAGGCGACCAAAGACGCCGGCGTTATTGCTGGACTGAA-TGTGCTGAGAATCATCAATGA 6256072 Query 195811 ACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGT 195870 || ||||| ||||| || ||||| || ||||| ||| |||| | ||| || || Sbjct 6256071 GCCCACAGCAGCTGCCATCGCTTACGGGCTGGATAAGGGCAAGAGAGGAGAGCGCAACGT 6256012 Query 195871 ATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGG 195930 ||||||||||| || ||||| || || ||||| || || | || | || || | ||| Sbjct 6256011 CTTGATCTTTGACCTGGGTGGCGGCACCTTTGACGTGTCCATCCTTACCATCGAGGATGG 6255952 Query 195931 TATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGC 195990 || || || || ||||| || || || || || || || ||||| || || || || Sbjct 6255951 GATCTTTGAGGTCAAGGCCACAGCAGGGGACACACACCTGGGTGGGGAGGACTTTGACAA 6255892 Query 195991 ACGTCTTCTCCGTCA-TTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTG 196049 || | || || ||||| || |||||| | || | ||||| || || | | Sbjct 6255891 CCGCATGGTCAACCACTTTGTG-GAAGAGTTCAAGAGGAAATACAAGAAGGACAT--CAG 6255835 Query 196050 GAAATCCTA--GGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT 196107 | | | | || || | | || | || |||||||| | ||||| |||| || Sbjct 6255834 CCAGAGCAAAAGAGCACTGAGGAGACTGCGCACCGCATGTGAGAGAGCCAAGAGAACCCT 6255775 Query 196108 CTCTTCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTA 196167 || || | |||| | | | || || || || ||| ||| || || |||||||| Sbjct 6255774 GTCCTCCAGCTCTCAGGCCAGCATCGAAATCGACTCTCTGTATGAAGGCATCGACTTCTA 6255715 Query 196168 TACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTAT 196227 || |||||||| | || |||||||| ||| | |||||||| | || || | | Sbjct 6255714 CACCTCTATTACCAGGGCTCGTTTTGAGGAGATGAACTCTGACCTCTTCAGAGGGACCTT 6255655 Query 196228 GGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAAT 196287 ||| || ||||| | | ||| | || || |||||||| |||||| | || |||| || Sbjct 6255654 GGAGCCGGTTGAGAAGGCACTCAGAGATGCCAAGATGGACAAGTCTCAAATTCATGACAT 6255595 Query 196288 TGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTT 196347 |||||||| ||||| || || || || || | ||| || | |||| |||||| Sbjct 6255594 CGTCCTTGTTGGAGGCTCCACTCGCATCCCCAGGATCCAGAAACTGCTGCAGGACTTCTT 6255535 Query 196348 CAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGC 196407 |||| | || | ||||| | |||||||| ||||| || || || |||||||| || Sbjct 6255534 CAATGGCAGGGAGCTGAACAAGAGCATCAACCCCGATGAGGCTGTGGCCTATGGTGCAGC 6255475 Query 196408 CGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACT 196467 || ||||| || || ||| || | | | | || || ||||| | ||||| || Sbjct 6255474 TGTGCAGGCAGCCATCCTCATGGGCGACACCTCTGAGAATGTGCAAGACTTACTGCTGCT 6255415 Query 196468 TGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTAT 196527 || || || || | || |||| | || || || || || || ||||| | || Sbjct 6255414 GGACGTGGCTCCACTGTCGTTGGGCATCGAGACTGCAGGAGGAGTCATGACAGCCCTCAT 6255355 Query 196528 TGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAA 196587 | | | ||||| || ||||| || ||| | || ||| | || ||| | || || Sbjct 6255354 TAAGCGCAACACTACCATTCCCACCAAGCAAACCCAGACCTTCACTACTTATGCAGACAA 6255295 Query 196588 TCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCA 196647 || || ||||| | || || || |||||||| ||| | || | ||||| ||| | Sbjct 6255294 CCAGCCTGGTGTCCTGATCCAGGTGTATGAAGGGGAAAGAGCCATGACCAAGGACAACAA 6255235 Query 196648 TCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGAT 196707 || || || | || || ||||||| || || |||| || |||| || |||||||| Sbjct 6255234 CCTTCTGGGCAAGTTTGAGCTGACGGGTATCCCCCCTGCCCCACGAGGGGTGCCACAGAT 6255175 Query 196708 TAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGC 196767 | || ||| || || ||||| ||||| ||||| ||||| | || | |||||| Sbjct 6255174 CGAGGTGACCTTTGACATTGACGCCAATGGCATTCTGAACGTGTCTGCAGTGGACAAAAG 6255115 Query 196768 TTCTGGCAAATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGA 196827 |||||||| | ||||| || |||||||||||||| ||||| || ||||| Sbjct 6255114 CACTGGCAAAGAGAACAAGATCACCATCACCAATGACAAGGGCCGGCTGAGCAAAGAGGA 6255055 Query 196828 AATTGAACGTATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 |||||| ||||| || || || || | |||| | ||| ||||| Sbjct 6255054 AATTGAGAAGATGGTGCAGGACGCCGAGAGATACAAAGCAGACGACGA 6255007 Score = 210 bits (232), Expect = 3e-49 Identities = 464/688 (67%), Gaps = 7/688 (1%) Strand=Plus/Minus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 ||||| ||||| | || || || ||||| ||||| || || | || ||| || Sbjct 6276665 ATTGGGATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGCAAGGTG 6276606 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 ||||| ||| | || ||||| || ||| | || || || || || ||||| || || Sbjct 6276605 GAGATCATCGCCAACGACCAGGGCAACAGGACCACCCCGAGCTATGTGGCCTTCACTGAC 6276546 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || | ||| | |||||||| || || || ||| || |||||||| | || || Sbjct 6276545 ACGGAGAGGCTCATCGGAGATGCAGCCAAGAACCAGGTGGCCATGAACCCCAATAACACC 6276486 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 ||||||| |||||||| || ||||| | |||| || || || |||| Sbjct 6276485 ATCTTTGATGCGAAGCGGCTGATTGGCAGGAAGTACGAAGACCCTGTTGTGCAGTCCGAT 6276426 Query 195542 ATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTT 195601 || ||| ||||| | | | ||| || || ||| | | ||||| | | | | || Sbjct 6276425 ATGAAGCACTGGCCCT-TCAAGGTGATCA--GTGATGGAGGCAAGCCCAAGGTGCAGGTG 6276369 Query 195602 GAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGAT 195660 || | | || ||||| || || | | | || ||||| || || |||||||| ||| Sbjct 6276368 GAGTACAAAGGAGAGAATAAGACCTTCTAC-CCAGAAGAGATCTCCTCTATGGTCCTGAC 6276310 Query 195661 TAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGAC 195720 |||||||||||||| ||| || | | | |||| | | || |||| || | || Sbjct 6276309 TAAGATGAAGGAGATTGCAGAGGCGTACCTGGGACAGAAAGTCTCCAATGCCGTCATCAC 6276250 Query 195721 TGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC 195780 || ||||| ||||||| ||| || || || |||||||| || ||||| | | |||||| Sbjct 6276249 CGTTCCTGCCTACTTCAATGACTCTCAGCGCCAGGCGACCAAAGACGCCGGCGTTATTGC 6276190 Query 195781 GGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTC 195839 || || || ||| || ||||| |||||||| || ||||| || || || ||||| || | Sbjct 6276189 TGGACTGAA-TGTGCTGAGAATCATCAATGAGCCCACAGCAGCGGCCATCGCTTACGGGC 6276131 Query 195840 TGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGT 195899 |||| ||| |||| | ||| || || ||||||||||| || ||||| || || | Sbjct 6276130 TGGATAAGGGCAAGAGAGGAGAGCGCAACGTCTTGATCTTTGACCTGGGTGGCGGCACCT 6276071 Query 195900 TTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTG 195959 |||| || || | || | || || | || || || || || ||||| || || || | Sbjct 6276070 TTGACGTGTCCATCCTTACCATCGAGGACGGGATCTTTGAGGTCAAGGCCACGGCAGGGG 6276011 Query 195960 ATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || || || ||||| || || || || Sbjct 6276010 ACACGCACCTGGGTGGGGAGGACTTTGA 6275983 >seq19 Length=9910484 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||||||||| || ||||| ||||| |||||||| ||||||||| | Sbjct 3882491 ATGCAGATCTTTGTGAAAACTCTGACTGGCAAAACCATCACCCTTGAGGTTGAGCCCAGT 3882432 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCC 171971 ||||| ||||| || | || || |||||||| ||||||||||| | ||| Sbjct 3882431 GACACCATCGAGAATGTGAAGGCTAAGATTCAGGATAAGGAAGGTAATCC 3882382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657846561962720