Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq26 170 2e-36 seq14 120 4e-21 seq1 89.7 6e-12 seq2 87.8 2e-11 >seq26 Length=13772684 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | | || Sbjct 11767575 GCTTGGCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGA 11767516 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| ||||||| | ||||||| |||| | Sbjct 11767515 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAGA 11767456 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||| |||| ||||||||||||| ||| | ||| |||||||| ||| |||| Sbjct 11767455 TGTCGCTGACGAACGAGTTCATGATGCCCATGGCCTTCGACGAGATGCCGGTGTCCGGGT 11767396 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 11767395 GCACCTGCTTCAGCACCTTGTA 11767374 Score = 147 bits (162), Expect = 3e-29 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | || Sbjct 9406866 GCTTGGCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAAGTGA 9406807 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| | ||||||| |||| | Sbjct 9406806 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAAA 9406747 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || |||||||||||||||| ||| | ||| ||| ||||| || |||| Sbjct 9406746 TGTCATTAACAAACGAGTTCATGATGCCCATGGCTTTGGAGGAAATGCCAGTATCCGGGT 9406687 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | || ||||| ||||| ||||||| Sbjct 9406686 GGACTTGCTTCAGCACTTTGTAGA 9406663 Score = 104 bits (114), Expect = 3e-16 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||||||||||||||| || | | || Sbjct 13771742 GCTTGGCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGA 13771683 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | ||| ||||||||| |||||||||| ||| ||||||| | ||||||| |||| Sbjct 13771682 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGA 13771626 >seq14 Length=32369425 Score = 120 bits (132), Expect = 4e-21 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | |||||||||||||||||| | ||| || | ||| ||| Sbjct 25448421 GCCAGCTCTCCGGGCAGCAGCAGGCGCACGGCGGTCTGCACCTCCCGGGACGTGATGGTG 25448480 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 | ||||| | || ||||| ||| ||||||| | | | ||| |||| |||||| Sbjct 25448481 GACCTTTTGTTGTAATGAGCCAGGCGGGACGCCTCGGCGGCCAGGCGCTCGAAGATGTCG 25448540 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| || |||||||||| ||| | |||| ||| || || ||| ||||||||| Sbjct 25448541 TTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAAATCCCGGTGTCCGGGTGCACC 25448600 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| || || ||||||||| Sbjct 25448601 TGCTTCAGGACTTTGTAGATG 25448621 >seq1 Length=69065196 Score = 89.7 bits (98), Expect = 6e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869831 ACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGG 869890 |||||||| |||||||||| |||||||||||||| |||||||||| ||| | | ||| Sbjct 49400326 ACCTCCTCCGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 49400267 Query 869891 TAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTCG 869944 || ||| ||||||| |||||| || ||||| || | || ||||| ||| Sbjct 49400266 TACTCGATGGGGAAGATGACAAACCGCCGAGGGTTCTCTCTCAGGAGGGGCTCG 49400213 Score = 86.0 bits (94), Expect = 8e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 869715 CCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAA 869774 |||| |||||| ||||||||||| || |||||||| |||||||||||||| ||| | Sbjct 49401030 CCAGATTCTCGTTAACGATGCCGTCACTAGCGGCGAAGAAAGCCAGGACGTGGGAGATGA 49400971 Query 869775 AGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCT 869834 ||| ||||| ||||| | || ||| ||||||| | ||| | ||||||||||| Sbjct 49400970 AGTACCGCTCCTCGTCCTTCAGGGACTCCCAGTGCTTGAGGTCTTTGGAGAGGTCCACCT 49400911 >seq2 Length=68575853 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 ||||||||||||||| ||| ||||||||||| |||||||||| |||||| |||||| Sbjct 60630681 CGTCATCTCCTTTGATGGCTCCTACGTCAACTACCGCCACTTGGCGCTGCTGTGCGACAC 60630622 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 ||| ||||| || || ||||| |||| || |||||| | ||||| Sbjct 60630621 GATGACTTGCCGTGGTCACCTGATGGCCATCACCCGGCACGGCGTGAACCG 60630571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106981143420542