Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq26 228 1e-53 seq14 168 1e-35 seq1 93.3 7e-13 seq6 89.7 8e-12 seq2 86.0 1e-10 >seq26 Length=13772684 Score = 228 bits (252), Expect = 1e-53 Identities = 197/244 (81%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 11767614 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 11767555 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| | ||| ||| ||||||||| | Sbjct 11767554 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 11767495 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| ||||||| | ||||||| |||| |||||| |||| |||||||||| Sbjct 11767494 GCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGCTGACGAACGAGTTCA 11767435 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || |||||||| ||| |||||||||||||| |||||||||| Sbjct 11767434 TGATGCCCATGGCCTTCGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 11767375 Query 1485710 AAAC 1485713 | || Sbjct 11767374 ACAC 11767371 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 9406905 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 9406846 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| ||| ||| ||||||||| | Sbjct 9406845 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGT 9406786 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||||||| |||||| | ||||||| |||| ||||| || ||||||||||||| Sbjct 9406785 GCGCCAGGCGGGACGCCTCGCCGGCGATGCGCTCGAAAATGTCATTAACAAACGAGTTCA 9406726 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||| ||||| || ||||| || ||||| ||||| |||| Sbjct 9406725 TGATGCCCATGGCTTTGGAGGAAATGCCAGTATCCGGGTGGACTTGCTTCAGCACTTTGT 9406666 Query 1485710 AAAC 1485713 | || Sbjct 9406665 AGAC 9406662 Score = 159 bits (176), Expect = 5e-33 Identities = 129/156 (83%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 13771781 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 13771722 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| |||| | ||| ||| ||||||||| | Sbjct 13771721 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAGT 13771662 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGA 1485625 ||||||||||| ||||||| | ||||||| |||| Sbjct 13771661 GCGCCAGGCGGGAGGCCTCGCCGGCGATGCGCTCGA 13771626 Score = 120 bits (132), Expect = 5e-21 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 11777052 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCTCCGGGCA 11776993 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTG 1485573 | |||||||||||||||||||||||| |||| | ||| ||| Sbjct 11776992 GCAGCAGGCGCACGGCGGTCTGGATCTCCCGGGAGGTGATGGTG 11776949 >seq14 Length=32369425 Score = 168 bits (186), Expect = 1e-35 Identities = 182/241 (76%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| | ||||| || ||| ||| Sbjct 25448377 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTAGCCAGCTCTCCGGGCA 25448436 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||| | ||| |||| ||| ||| | ||||| Sbjct 25448437 GCAGCAGGCGCACGGCGGTCTGCACCTCCCGGGACGTGATGGTGGACCTTTTGTTGTAAT 25448496 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||||||| | | | ||| |||| ||||||||||| || ||||||| Sbjct 25448497 GAGCCAGGCGGGACGCCTCGGCGGCCAGGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 25448556 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||| || || ||| |||||||||||||| || || |||| Sbjct 25448557 TGATGCTCATGGCCTTGGAGGAAATCCCGGTGTCCGGGTGCACCTGCTTCAGGACTTTGT 25448616 Query 1485710 A 1485710 | Sbjct 25448617 A 25448617 >seq1 Length=69065196 Score = 93.3 bits (102), Expect = 7e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| |||||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 49400326 ACCTCCTCCGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 49400267 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || ||||||||| | ||||| || |||||||| | || || |||||| Sbjct 49400266 TACTCGATGGGGAAGATGACAAACCGCCGAGGGTTCTCTCTCAGGAGGGGCTCG 49400213 >seq6 Length=40768737 Score = 89.7 bits (98), Expect = 8e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 ||||| || || ||||| ||||||||||| ||||| |||||||||| ||| || ||| Sbjct 2468883 ACCTCTTCCGCCGTCCAGAAGGAGGCCTCCGCCTTCTTGTACATCTGCCAGATGTCGTGG 2468942 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTCG 796416 || |||||||||| | || ||||| |||||||| | ||||| |||||| Sbjct 2468943 TACTGGATGGGGAAGATGACGAAGCGCCGCGGGTTCTCCCTGAGCAGGGGCTCG 2468996 >seq2 Length=68575853 Score = 86.0 bits (94), Expect = 1e-10 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| ||||||||||| ||| ||||||||||| |||||||||| |||||| |||||| Sbjct 60630681 CGTCATCTCCTTTGATGGCTCCTACGTCAACTACCGCCACTTGGCGCTGCTGTGCGACAC 60630622 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCGG 434237 ||| || || || || ||||| |||| ||||||||| | |||||| Sbjct 60630621 GATGACTTGCCGTGGTCACCTGATGGCCATCACCCGGCACGGCGTGAACCGG 60630570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916041522595514