Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 4e-14 seq22 87.8 2e-12 >seq3 Length=56798892 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||| ||||| | |||||| || | || || || |||||||| ||||| ||||| || || Sbjct 12781867 GCCTTCGTAAGTGCTGTAGGGCTCCTGTGCTGCAGCCAGTTCACAGCTGGCCTCCAGAGC 12781926 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTA 148618 |||||||||| ||||| || || |||| |||||| ||| ||| || | Sbjct 12781927 TGCGTAGTAAATGGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCCTCGGGGCTCTCAAA 12781986 Query 148619 CGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGGCCG 148678 ||| |||| | | | || || ||||| ||||| || ||||| | ||||||||||| Sbjct 12781987 CGGGTAGCGCATCAGGATGAAGGCATCGGCCAGGCCTTGGACGCCAATTCCAATGGGCCG 12782046 Query 148679 GTGTTTAATGTTGGAG 148694 ||| |||||||| Sbjct 12782047 GTGACGCCTGTTGGAG 12782062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || | ||| | ||||||||||||||| ||||| |||| ||||| || | Sbjct 12782469 TGTACTCCACCACCTCTGTGCACAGATTGCTGCACTTGATGGTACCCAGGTTCTGCTGGT 12782528 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 ||||||| ||||||||||| || ||||| | |||||| || Sbjct 12782529 TGCTCTTCCTGTTGCACGCATCTTTGTAAACCATGTAGGG 12782568 >seq22 Length=11620783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 133545 TCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTG 133604 || ||||||||||| || ||||| |||||| ||||| | ||| | ||||| || Sbjct 3897205 TCAGGAGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTG 3897264 Query 133605 GGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || | ||||| ||| ||||| |||||||| || || || |||||||| Sbjct 3897265 GGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGAGTCTTGACAAAGATCTGCAT 3897320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483409161644240