Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq19 100 9e-18 seq5 100 9e-18 seq9 98.7 3e-17 seq7 98.7 3e-17 seq2 86.0 2e-13 seq350 82.4 2e-12 >seq19 Length=9910484 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 2881622 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 2881681 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 2881682 CCCGGGTTTCGGC 2881694 >seq5 Length=51417047 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 50395128 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 50395069 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 50395068 CCCGGGTTTCGGC 50395056 Score = 98.7 bits (108), Expect = 3e-17 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 12992544 GGCTGAAATAGTTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 12992485 Query 2828 CCCGGGCTT 2836 || ||| || Sbjct 12992484 CCAGGGTTT 12992476 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 50103885 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 50103944 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 50103945 CCGGGTTTCGGC 50103956 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 50393849 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 50393790 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 50393789 CCGGGTTTCGGC 50393778 Score = 84.2 bits (92), Expect = 7e-13 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||| || || ||||| |||||||||||||||||||||||||| | Sbjct 1612905 GCTGAAATAGCTCAGTTGGAAGGGCGTTAGAGTGAAGATCTAAAGGTCCCTGGTTCAATC 1612846 Query 2829 C 2829 | Sbjct 1612845 C 1612845 >seq9 Length=53241385 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 34866304 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 34866363 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 34866364 CCGGGTTTCGGC 34866375 >seq7 Length=50812227 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 45618574 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 45618633 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 45618634 CCGGGTTTCGGC 45618645 >seq2 Length=68575853 Score = 86.0 bits (94), Expect = 2e-13 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||||| ||||||||||| ||||||||||||||||| | ||| Sbjct 12403367 GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGCTCTAAAGGTCCCTGGTTTGATCCCA 12403308 Query 2832 GGCTTCA 2838 || |||| Sbjct 12403307 GGTTTCA 12403301 >seq350 Length=22368 Score = 82.4 bits (90), Expect = 2e-12 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| ||||||||||||||||| ||||| ||||||||||||||||||||||| | |||| Sbjct 333 GAAATAGCTCAGTTGGGAGAGTGTTAGATTGAAGATCTAAAGGTCCCTGGTTTGATCCCG 274 Query 2832 GGCTT 2836 || || Sbjct 273 GGTTT 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849266118270