Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq9 131 2e-25 >seq9 Length=53241385 Score = 131 bits (144), Expect = 2e-25 Identities = 128/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || || || || | |||||| |||||||||| |||||||| |||||||| Sbjct 31664038 CTTCAGCCCAGTGACATGAGCGATCATGTATGTGAGCAGCGCATAGCTGGCAATGTTGAA 31663979 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || ||||| |||||||| || || | ||| || |||||||| || | || || | Sbjct 31663978 TGGCACACCCAGCCCCATGTCTCCTGAGCGCTGATAGAGCTGGCAGGACAATTCACCATT 31663919 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || ||||||||||||||||||| ||| || || || || ||||| Sbjct 31663918 GGACACGTAAAACTGGCACAGGGCGTGACAGGGAGGAAGAGCCAT 31663874 Score = 86.0 bits (94), Expect = 7e-12 Identities = 123/171 (72%), Gaps = 8/171 (5%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 || ||||||||||||||||| || || ||||||||||| ||||| || || |||| Sbjct 31661989 GCTCCAAAGTGCCTCCACTGAAAACCATACACTGGCCCTAGGTCACCTTCCTCTCTGGAG 31661930 Query 147343 GAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACT 147399 | |||| | | |||| | |||||| |||| || | || |||||||| ||| Sbjct 31661929 GTAAAGC---CACTCTTGTCTAAAAACTCCCGGGATCCATTTGCATCCCAGATTTTGACT 31661873 Query 147400 CCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGC 147450 ||||| ||| |||||||| |||| || |||||| || ||| ||||| Sbjct 31661872 CCCTTCATGGACAGCTCCTTGGAGTTTGTAGAGCCCTAGA--AACAAGAGC 31661824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583473952526400