Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq26 188 1e-41 seq14 145 1e-28 seq2 91.5 2e-12 seq1 87.8 3e-11 >seq26 Length=13772684 Score = 188 bits (208), Expect = 1e-41 Identities = 180/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || ||| ||||| Sbjct 11767374 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCGAAGGCCATG 11767427 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||| |||||| |||| ||||||| | ||||||| ||| Sbjct 11767428 GGCATCATGAACTCGTTCGTCAGCGACATCTTCGAGCGCATCGCCGGCGAGGCCTCCCGC 11767487 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | | || ||||||||||||||||||||| Sbjct 11767488 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACCGCCGTGCGC 11767547 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 11767548 CTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 11767596 Score = 174 bits (192), Expect = 2e-37 Identities = 179/231 (77%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||| ||||| ||||| || ||||| || ||| |||||||| || ||| Sbjct 9406663 TCTACAAAGTGCTGAAGCAAGTCCACCCGGATAC---TGGCATTTCCTCCAA--AG-CCA 9406716 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||||||||| || ||||| |||| ||||||| | |||||| | Sbjct 9406717 TGGGCATCATGAACTCGTTTGTTAATGACATTTTCGAGCGCATCGCCGGCGAGGCGTCCC 9406776 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||||| || |||||||||| ||| ||| | || ||||||||||||||||||| Sbjct 9406777 GCCTGGCGCACTACAACAAGCGCTCCACCATCACTTCCCGGGAGATCCAGACCGCCGTGC 9406836 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 9406837 GCCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 9406887 Score = 136 bits (150), Expect = 6e-26 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 725005 TCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCG 725064 |||| ||||||| | ||||||| |||||||||| || |||||||||| ||| ||| Sbjct 13771626 TCGAGCGCATCGCCGGCGAGGCCTCCCGCCTGGCGCACTACAACAAGCGCTCCACCATCA 13771685 Query 725065 GCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACG 725124 | | || |||||||||||||||||||||||| | ||| ||| || ||||||| ||||| Sbjct 13771686 CCTCCCGGGAGATCCAGACCGCCGTGCGCCTGCTGCTGCCCGGAGAGCTGGCCAAGCACG 13771745 Query 725125 CCGTCTCCGAGGGCACCA 725142 |||| ||||||||||||| Sbjct 13771746 CCGTGTCCGAGGGCACCA 13771763 Score = 93.3 bits (102), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 725057 CACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGC 725116 ||| ||| | | || |||||||||||||||||||||||| | ||| ||| || ||||| Sbjct 11776949 CACCATCACCTCCCGGGAGATCCAGACCGCCGTGCGCCTGCTGCTGCCCGGAGAGCTGGC 11777008 Query 725117 CAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||||||| ||||||||||||| Sbjct 11777009 CAAGCACGCCGTGTCCGAGGGCACCA 11777034 >seq14 Length=32369425 Score = 145 bits (160), Expect = 1e-28 Identities = 172/232 (74%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || || |||||||||||||| |||| || |||||||| | || Sbjct 25448620 ATCTACAAAGTCCTGAAGCAGGTGCACCCGGACACCG---GGATTTCCTCCAA---GGCC 25448567 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||| || ||||||||||| |||| ||| | | | ||||||| Sbjct 25448566 ATGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCCTGGCCGCCGAGGCGTCC 25448507 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | | |||||| | ||| ||| | || ||| | |||||||||||| Sbjct 25448506 CGCCTGGCTCATTACAACAAAAGGTCCACCATCACGTCCCGGGAGGTGCAGACCGCCGTG 25448447 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||| | ||||||||| ||||||||||||| Sbjct 25448446 CGCCTGCTGCTGCCCGGAGAGCTGGCTAAGCACGCCGTGTCCGAGGGCACCA 25448395 >seq2 Length=68575853 Score = 91.5 bits (100), Expect = 2e-12 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Plus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164 ||||| | ||||||||| |||| ||||| || ||| || |||||| ||| |||||| Sbjct 60630571 CGGTTCACGCCGTGCCGGGTGATGGCCATCAGGTGA-CCACGGCAAGTCATCGTGTCGCA 60630629 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 |||||| |||||||||| |||||| |||| ||| ||||||||||| ||| Sbjct 60630630 CAGCAGCGCCAAGTGGCGGTAGTTGACGTAGGAGCCATCAAAGGAGATGACG 60630681 >seq1 Length=69065196 Score = 87.8 bits (96), Expect = 3e-11 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||| || ||| | || ||||| || |||||| | ||||||||| ||||| Sbjct 49400213 CGAGCCCCTCCTGAGAGAGAACCCTCGGCGGTTTGTCATCTTCCCCATCGAGTACCACGA 49400272 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || ||||||||||||||||| |||||||| |||||||| Sbjct 49400273 CATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCGGAGGAGGT 49400326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177625433760012