Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq10 109 8e-19 seq21 95.1 2e-14 >seq10 Length=42345482 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 213995 CAGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTT 214054 ||||| || || || ||| | ||||||||| || ||||| | || ||| | ||| Sbjct 486325 CAGATGATCGATGGCGAAATGTACCCTCCTTTGGTGAAGGACGTCCAGGTGGACATGCAC 486266 Query 214055 TACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 ||| || || |||||| || | |||||| |||| |||| ||||| || Sbjct 486265 TACCCTCCTCATGTGCCCGAAGAGCACAGATTCGCAGTGGGGCACGACGCCTTTGGCCTT 486206 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| || ||||| |||| |||| ||||||||||||||| || ||| | || || || Sbjct 486205 GTGCCAGGGCTCATGATGTATGCCACTATCTGGCTGAGAGAACATAACCGAGTGTGTGAT 486146 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGA 214209 || |||| ||| |||||||| || ||| |||| || Sbjct 486145 GTCCTGAGACAGGAGCACCCAGAGTGGGACGATGA 486111 >seq21 Length=15143781 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 214128 TGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAG 214187 || ||||||||| ||||||||||| ||||||||| |||| || ||| | ||||| | | Sbjct 4328122 TGATGTACGCCACCATCTGGCTGAGGGAGCACAACCGGGTGTGTGACATTCTGAAGAAGG 4328181 Query 214188 AGCACCCGGAATGGAACGACGAACAGCTGTTCCAGATCACTCGTTTAATCAT 214239 ||||||| |||| |||||| ||||| ||||||| ||||| | ||||| Sbjct 4328182 AGCACCCCACCTGGAGCGACGAGCAGCTATTCCAGACGGCTCGTCTCATCAT 4328233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723323385570240