Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq11 111 2e-19 seq3 86.0 9e-12 >seq1 Length=69065196 Score = 120 bits (132), Expect = 4e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| || ||||| || || ||||| || ||||| || || | ||| | Sbjct 49401943 CCTCATCTCTGCTAATCAACTCGTTTGAGAAGGTGAGGCCTGGCATCAGGCCTCTCTTCT 49401884 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| ||||||| |||||| || ||||| || ||||| ||||||||||| ||||| | Sbjct 49401883 TCAGCCAGAATATGGAAGCAAATGACCCAGAGAAAAAGATACCTTCTACTGCAGCAAAGG 49401824 Query 39759 CAACAA 39764 | |||| Sbjct 49401823 CCACAA 49401818 >seq11 Length=41528230 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | || || ||| | || ||||| ||||| ||||| | ||| | Sbjct 33620174 CCTCATCTCTGCTGATAAGCTCATTGGAATAGGTCAGTCCTGGCATGAGACCCCTCTTCT 33620233 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | || ||||| ||||| || || || ||||| ||||||||||| ||||| | Sbjct 33620234 TCAGCCAGTAAATAGCAGCGAAAGAGCCGGAGAAAAAGATACCTTCTACTGCAGCAAAGG 33620293 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| ||||||||| Sbjct 33620294 CCACAATTCTCTCTCC 33620309 >seq3 Length=56798892 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | ||| || || ||||| |||||||| || || || ||||| ||| Sbjct 12785014 GTCCCAGCATTGAAGAGTGTGGGCGAAGCGTGCGTGAACCACTTCTCCGACAGCAGGTTG 12785073 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || ||||||||||| | || || ||| || ||||| || | | || | ||||| | Sbjct 12785074 TACGTTTCAATAGCAGCGTCAATGTCCAGCTTGTGAATCCCGACAGACACTCTCATCAGC 12785133 Query 70111 ATATGCTGAGGTCGTTC 70127 || |||||||| || || Sbjct 12785134 ATGTGCTGAGGACGCTC 12785150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686892262670640