Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11 93.3 5e-14 seq3 91.5 2e-13 seq1 84.2 3e-11 >seq11 Length=41528230 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | ||||| ||||| || || || |||||||||||||||| ||||| Sbjct 33620174 CCTCATCTCTGCTGATAAGCTCATTGGAATAGGTCAGTCCTGGCATGAGACCCCTCTTCT 33620233 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 ||| ||| |||||||| ||| || |||||||| |||||||| || || Sbjct 33620234 TCAGCCAGTAAATAGCAGCGAAAGAGCCGGAGAAAAAGATACCTTCTAC 33620282 >seq3 Length=56798892 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||| | | ||||| || | ||| | ||| || || |||| |||| ||| Sbjct 12782468 GTGTACTCCACCACCTCTGTGCACAGATTGCTGCACTTGATGGTACCCAGGTTCTGCTGG 12782527 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || |||||| ||||||||||||| ||||| | ||||||||| || || ||||||||||| Sbjct 12782528 TTGCTCTTCCTGTTGCACGCATCTTTGTAAACCATGTAGGGGGTTCCGGTCTCCGTCTGA 12782587 Query 111398 GATTTGAGAATAGCCTTCCA 111417 || | || || || | ||| Sbjct 12782588 GACTCGATGATCGCGTACCA 12782607 >seq1 Length=69065196 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||| || |||||||| |||||||||||||| || || ||| ||||||||||| Sbjct 49403061 TACTCCCCTACGCGCTTCTCGAAGAAGTTGGTCTTTCCTTCCAGGGAGATGTTTTCCATG 49403002 Query 122431 AAGTCAAATGGATTCT 122446 |||||||| ||||||| Sbjct 49403001 AAGTCAAAAGGATTCT 49402986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016880129600