Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq26 100 9e-16 seq19 89.7 2e-12 >seq26 Length=13772684 Score = 100 bits (110), Expect = 9e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||||||| | ||||| ||||| || || || || | ||||| || |||||||||| Sbjct 9355726 ATGCTGTTGTCACTGTGCCAGCGTACTTCAACGACTCTCAGCGCCAGGCTACAAAAGATG 9355667 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||||| |||| | ||| | ||||| || | || |||||||| || |||||||| || | Sbjct 9355666 CTGGCACCATTTCTGGGCTTAATGTGCTCCGGATCATTAATGAGCCAACTGCTGCTGCTA 9355607 Query 349728 TTGCATATGGGCTTG 349742 |||| ||| |||||| Sbjct 9355606 TTGCCTAT-GGCTTG 9355593 >seq19 Length=9910484 Score = 89.7 bits (98), Expect = 2e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| || || || || || || | ||| || |||||||| || ||||| |||||||| | Sbjct 3881794 CTTTCTGGATGTTGTAGTCTGACAGTGTGCGTCCATCTTCCAGCTGTTTGCCAGCAAAAA 3881853 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | ||||| ||||||||||||||||||||| Sbjct 3881854 TCAGACGCTGCTGATCAGGAGGAATTCCT 3881882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515217008256578