Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepisosteus_20oculatus_20[refseq_20GCF_5F000242695.1_202012-01-13] 1,926 sequences; 945,878,036 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq9 100 2e-16 >seq9 Length=53241385 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 ||||||| || || |||||||||||||| || || || |||||||| ||||||||| Sbjct 31664031 CCAGTGACATGAGCGATCATGTATGTGAGCAGCGCATAGCTGGCAATGTTGAATGGCACA 31663972 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || ||||| ||||| || | ||||| ||||| || || | || | | ||||| Sbjct 31663971 CCCAGCCCCATGTCTCCTGAGCGCTGATAGAGCTGGCAGGACAATTCACCATTGGACACG 31663912 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCAT 111935 ||||| || || || | ||||| ||||| | ||||| Sbjct 31663911 TAAAACTGGCACAGGGCGTGACAGGGAGGAAGAGCCAT 31663874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391936399811938